Gene annotation
Transcriptome id Sobic.008G098800.1
Synonym RPS6B, EMB3010, Sb08g015010
Functional annotation 40S ribosomal protein S6, putative, expressed
UniProt C5YNS4
Pfam PF01092
Panther DB PTHR11502 PTHR11502:SF10
NCBI CDD KOG1646; 40S ribosomal protein S6
KEGG Orthology K02991; RP-S6e, small subunit ribosomal protein S6e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G10360 : Ribosomal protein S6e
RAP-DB (Rice) LOC_Os03g27260.1 : 40S ribosomal protein S6, putative, expressed
MaizeGDB (Corn) Zm00025a015236
Brachypodium KQK15221 , KQK21435 , KQK21436
Barley HORVU2Hr1G010870.12 , HORVU2Hr1G010870.13 , HORVU2Hr1G010870.10 , HORVU2Hr1G010870.11 , HORVU2Hr1G010890.2 , HORVU2Hr1G010890.3 , HORVU2Hr1G010890.1 , HORVU2Hr1G010870.4 , HORVU2Hr1G010870.5 , HORVU2Hr1G010870.6 , HORVU2Hr1G010870.7 , HORVU2Hr1G010870.1 , HORVU2Hr1G010870.2 , HORVU2Hr1G010870.3 , HORVU2Hr1G010870.8 , HORVU2Hr1G010870.9
Wheat TraesCS2A02G066200 , TraesCS2B02G078200 , TraesCS2A02G163700 , TraesCS2B02G189500 , TraesCS2D02G064500 , TraesCS2B02G078300 , TraesCS2A02G066100 , TraesCS2D02G064600 , TraesCS2D02G170600
Populus -


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cDNA sequences
Sobic.008G098800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
2 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
3 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
4 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
5 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
6 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
7 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
8 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
9 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
10 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
11 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
12 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
13 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
14 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
15 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
16 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
17 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
18 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
19 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
20 Sobic.008G094600 - -


Gene co-expression network
sample Sobic008G098800 Sobic008G098800 Sobic001G058900 Sobic001G058900 Sobic008G098800--Sobic001G058900 Sobic002G049300 Sobic002G049300 Sobic008G098800--Sobic002G049300 Sobic009G233400 Sobic009G233400 Sobic008G098800--Sobic009G233400 Sobic010G069400 Sobic010G069400 Sobic008G098800--Sobic010G069400 Sobic006G201500 Sobic006G201500 Sobic008G098800--Sobic006G201500 Sobic002G304900 Sobic002G304900 Sobic008G098800--Sobic002G304900 Sobic001G377800 Sobic001G377800 Sobic008G098800--Sobic001G377800 Sobic005G050500 Sobic005G050500 Sobic008G098800--Sobic005G050500 Sobic003G280700 Sobic003G280700 Sobic008G098800--Sobic003G280700 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic001G058900--Sobic001G085400 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic003G249700 Sobic003G249700 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic002G049300--Sobic001G085400 Sobic007G178600 Sobic007G178600 Sobic002G049300--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic002G049300--Sobic002G047600 Sobic009G022400 Sobic009G022400 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic006G137100 Sobic006G137100 Sobic002G049300--Sobic006G137100 Sobic002G286900 Sobic002G286900 Sobic002G049300--Sobic002G286900 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic009G233400--Sobic001G039400 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic010G069400--Sobic003G387900 Sobic010G069400--Sobic009G233400 Sobic010G069400--Sobic001G039400 Sobic010G069400--Sobic005G050500 Sobic010G069400--Sobic002G304900 Sobic010G069400--Sobic002G047600 Sobic004G349700 Sobic004G349700 Sobic010G069400--Sobic004G349700 Sobic002G056200 Sobic002G056200 Sobic010G069400--Sobic002G056200 Sobic010G069400--Sobic001G085400 Sobic006G201500--Sobic002G115000 Sobic006G201500--Sobic001G085400 Sobic006G201500--Sobic009G233400 Sobic010G166100 Sobic010G166100 Sobic006G201500--Sobic010G166100 Sobic007G019000 Sobic007G019000 Sobic006G201500--Sobic007G019000 Sobic006G201500--Sobic010G069400 Sobic006G201500--Sobic001G058900 Sobic006G201500--Sobic008G098800 Sobic006G201500--Sobic003G249700 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic002G406500 Sobic002G406500 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G377800--Sobic001G085400 Sobic001G091801 Sobic001G091801 Sobic001G377800--Sobic001G091801 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic001G377800--Sobic006G081100 Sobic001G377800--Sobic002G049300 Sobic009G050300 Sobic009G050300 Sobic001G377800--Sobic009G050300 Sobic005G050500--Sobic002G304900 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic003G280700--Sobic002G049300 Sobic001G011200 Sobic001G011200 Sobic003G280700--Sobic001G011200 Sobic003G280700--Sobic006G081100 Sobic003G280700--Sobic005G050500 Sobic003G280700--Sobic001G085400 Sobic004G198400 Sobic004G198400 Sobic003G280700--Sobic004G198400 Sobic003G280700--Sobic002G056200 Sobic003G280700--Sobic009G022400 Sobic001G403500 Sobic001G403500 Sobic003G280700--Sobic001G403500
Octagon: transcription factors


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