Gene annotation
Transcriptome id Sobic.008G100000.1
Synonym Sb08g015270
Functional annotation 40S ribosomal protein S9-2, putative, expressed
UniProt C5YNT6
Pfam PF00163 PF01479
Panther DB PTHR11831 PTHR11831:SF11
NCBI CDD KOG3301; Ribosomal protein S4
KEGG Orthology K02997; RP-S9e, small subunit ribosomal protein S9e
Gene Ontology GO:0005622; intracellular GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G39850 : Ribosomal protein S4
RAP-DB (Rice) LOC_Os03g05980.1 : 40S ribosomal protein S9-2, putative, expressed
MaizeGDB (Corn) Zm00025a052075 , Zm00025a025621 , Zm00025a002671
Brachypodium KQJ86681
Barley HORVU5Hr1G038920.3 , HORVU5Hr1G038920.2 , HORVU5Hr1G038920.1 , HORVU5Hr1G038920.4
Wheat TraesCS5D02G121600 , TraesCS5B02G112200 , TraesCS5A02G104000 , TraesCS2B02G183500 , TraesCS2D02G164100
Populus -


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cDNA sequences
Sobic.008G100000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
2 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
3 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
4 Sobic.008G094600 - -
5 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
6 Sobic.010G005300 ribosomal protein L6, putative, expressed K02940: RP-L9e, large subunit ribosomal protein L9e
7 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
8 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
9 Sobic.008G108601 - K02980: RP-S29e, small subunit ribosomal protein S29e
10 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
11 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
12 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
13 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
14 Sobic.004G103700 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
15 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
16 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
17 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
18 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
19 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
20 Sobic.001G172000 expressed protein -


Gene co-expression network
sample Sobic008G100000 Sobic008G100000 Sobic008G098800 Sobic008G098800 Sobic008G100000--Sobic008G098800 Sobic001G510800 Sobic001G510800 Sobic008G100000--Sobic001G510800 Sobic001G058900 Sobic001G058900 Sobic008G100000--Sobic001G058900 Sobic008G094600 Sobic008G094600 Sobic008G100000--Sobic008G094600 Sobic004G002350 Sobic004G002350 Sobic008G100000--Sobic004G002350 Sobic010G005300 Sobic010G005300 Sobic008G100000--Sobic010G005300 Sobic002G286900 Sobic002G286900 Sobic008G100000--Sobic002G286900 Sobic002G304900 Sobic002G304900 Sobic008G100000--Sobic002G304900 Sobic008G108601 Sobic008G108601 Sobic008G100000--Sobic008G108601 Sobic008G098800--Sobic001G058900 Sobic002G049300 Sobic002G049300 Sobic008G098800--Sobic002G049300 Sobic009G233400 Sobic009G233400 Sobic008G098800--Sobic009G233400 Sobic010G069400 Sobic010G069400 Sobic008G098800--Sobic010G069400 Sobic006G201500 Sobic006G201500 Sobic008G098800--Sobic006G201500 Sobic008G098800--Sobic002G304900 Sobic001G377800 Sobic001G377800 Sobic008G098800--Sobic001G377800 Sobic005G050500 Sobic005G050500 Sobic008G098800--Sobic005G050500 Sobic003G280700 Sobic003G280700 Sobic008G098800--Sobic003G280700 Sobic001G510800--Sobic010G005300 Sobic002G179300 Sobic002G179300 Sobic001G510800--Sobic002G179300 Sobic001G510800--Sobic001G058900 Sobic001G510800--Sobic008G100000 Sobic001G510800--Sobic008G108601 Sobic001G225700 Sobic001G225700 Sobic001G510800--Sobic001G225700 Sobic002G415500 Sobic002G415500 Sobic001G510800--Sobic002G415500 Sobic006G057200 Sobic006G057200 Sobic001G510800--Sobic006G057200 Sobic009G227400 Sobic009G227400 Sobic001G510800--Sobic009G227400 Sobic008G135000 Sobic008G135000 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic001G058900--Sobic001G085400 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic003G249700 Sobic003G249700 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic008G094600--Sobic008G098800 Sobic002G135200 Sobic002G135200 Sobic008G094600--Sobic002G135200 Sobic008G094600--Sobic001G058900 Sobic003G129800 Sobic003G129800 Sobic008G094600--Sobic003G129800 Sobic009G223300 Sobic009G223300 Sobic008G094600--Sobic009G223300 Sobic001G517600 Sobic001G517600 Sobic008G094600--Sobic001G517600 Sobic008G094600--Sobic008G100000 Sobic001G513500 Sobic001G513500 Sobic008G094600--Sobic001G513500 Sobic001G286300 Sobic001G286300 Sobic008G094600--Sobic001G286300 Sobic003G025200 Sobic003G025200 Sobic004G002350--Sobic003G025200 Sobic004G002350--Sobic002G049300 Sobic004G002350--Sobic001G377800 Sobic004G002350--Sobic008G098800 Sobic003G018600 Sobic003G018600 Sobic004G002350--Sobic003G018600 Sobic001G018800 Sobic001G018800 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic006G115000 Sobic006G115000 Sobic004G002350--Sobic006G115000 Sobic010G005300--Sobic001G510800 Sobic010G005300--Sobic001G058900 Sobic010G005300--Sobic002G415500 Sobic010G005300--Sobic009G233400 Sobic010G005300--Sobic008G100000 Sobic001G039400 Sobic001G039400 Sobic010G005300--Sobic001G039400 Sobic010G005300--Sobic008G135000 Sobic010G005300--Sobic002G304900 Sobic010G005300--Sobic001G225700 Sobic006G137100 Sobic006G137100 Sobic002G286900--Sobic006G137100 Sobic002G286900--Sobic008G108601 Sobic004G008400 Sobic004G008400 Sobic002G286900--Sobic004G008400 Sobic009G050300 Sobic009G050300 Sobic002G286900--Sobic009G050300 Sobic001G226500 Sobic001G226500 Sobic002G286900--Sobic001G226500 Sobic001G403500 Sobic001G403500 Sobic002G286900--Sobic001G403500 Sobic002G286900--Sobic003G249700 Sobic005G110800 Sobic005G110800 Sobic002G286900--Sobic005G110800 Sobic007G178600 Sobic007G178600 Sobic002G286900--Sobic007G178600 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic003G387900 Sobic003G387900 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic008G108601--Sobic007G178600 Sobic008G108601--Sobic004G008400 Sobic008G108601--Sobic002G286900 Sobic008G108601--Sobic003G249700 Sobic002G047600 Sobic002G047600 Sobic008G108601--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic008G108601--Sobic007G019400 Sobic010G206200 Sobic010G206200 Sobic008G108601--Sobic010G206200 Sobic008G108601--Sobic002G049300 Sobic008G108601--Sobic001G226500
Octagon: transcription factors


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