Gene annotation
Transcriptome id Sobic.010G005300.1
Synonym PGY2, Sb10g000700
Functional annotation ribosomal protein L6, putative, expressed
UniProt C5Z267
Pfam PF00347
Panther DB PTHR11655 PTHR11655:SF18
NCBI CDD KOG3255; 60S ribosomal protein L9
KEGG Orthology K02940; RP-L9e, large subunit ribosomal protein L9e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G33140 : Ribosomal protein L6 family
RAP-DB (Rice) LOC_Os09g31180.1 : ribosomal protein L6, putative, expressed
MaizeGDB (Corn) Zm00025a035088 , Zm00025a050305 , Zm00025a041170
Brachypodium KQK20034 , KQK15313 , KQJ92779
Barley HORVU2Hr1G058720.1 , HORVU3Hr1G001140.3 , HORVU3Hr1G001140.2 , HORVU3Hr1G001140.1 , HORVU3Hr1G001140.5 , HORVU3Hr1G001140.4 , HORVU7Hr1G002060.1 , HORVU7Hr1G002060.2 , HORVU0Hr1G006020.2 , HORVU7Hr1G043940.1
Wheat TraesCS7D02G016500 , TraesCS7D02G016500 , TraesCS3B02G011300 , TraesCS3B02G007200 , TraesCS3B02G011900 , TraesCS3A02G007300 , TraesCS4A02G472200 , TraesCS7A02G020200 , TraesCS3D02G003200 , TraesCS3D02G003800 , TraesCS3B02G006500 , TraesCS7A02G020200
Populus -


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cDNA sequences
Sobic.010G005300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
2 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
3 Sobic.002G415500 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
4 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
5 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
6 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
7 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
8 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
9 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
10 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
11 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
12 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
13 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
14 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
15 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
16 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
17 Sobic.001G347901 - -
18 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
19 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
20 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e


Gene co-expression network
sample Sobic010G005300 Sobic010G005300 Sobic001G510800 Sobic001G510800 Sobic010G005300--Sobic001G510800 Sobic001G058900 Sobic001G058900 Sobic010G005300--Sobic001G058900 Sobic002G415500 Sobic002G415500 Sobic010G005300--Sobic002G415500 Sobic009G233400 Sobic009G233400 Sobic010G005300--Sobic009G233400 Sobic008G100000 Sobic008G100000 Sobic010G005300--Sobic008G100000 Sobic001G039400 Sobic001G039400 Sobic010G005300--Sobic001G039400 Sobic008G135000 Sobic008G135000 Sobic010G005300--Sobic008G135000 Sobic002G304900 Sobic002G304900 Sobic010G005300--Sobic002G304900 Sobic001G225700 Sobic001G225700 Sobic010G005300--Sobic001G225700 Sobic001G510800--Sobic010G005300 Sobic002G179300 Sobic002G179300 Sobic001G510800--Sobic002G179300 Sobic001G510800--Sobic001G058900 Sobic001G510800--Sobic008G100000 Sobic008G108601 Sobic008G108601 Sobic001G510800--Sobic008G108601 Sobic001G510800--Sobic001G225700 Sobic001G510800--Sobic002G415500 Sobic006G057200 Sobic006G057200 Sobic001G510800--Sobic006G057200 Sobic009G227400 Sobic009G227400 Sobic001G510800--Sobic009G227400 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic002G115000 Sobic002G115000 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G085400 Sobic001G085400 Sobic001G058900--Sobic001G085400 Sobic008G098800 Sobic008G098800 Sobic001G058900--Sobic008G098800 Sobic002G049300 Sobic002G049300 Sobic001G058900--Sobic002G049300 Sobic003G249700 Sobic003G249700 Sobic001G058900--Sobic003G249700 Sobic001G334300 Sobic001G334300 Sobic001G058900--Sobic001G334300 Sobic009G115700 Sobic009G115700 Sobic002G415500--Sobic009G115700 Sobic002G415500--Sobic001G334300 Sobic002G415500--Sobic009G233400 Sobic007G019400 Sobic007G019400 Sobic002G415500--Sobic007G019400 Sobic002G415500--Sobic002G304900 Sobic002G415500--Sobic001G058900 Sobic009G076400 Sobic009G076400 Sobic002G415500--Sobic009G076400 Sobic002G415500--Sobic009G227400 Sobic002G415500--Sobic001G039400 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic009G233400--Sobic010G069400 Sobic009G233400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400 Sobic008G100000--Sobic008G098800 Sobic008G100000--Sobic001G510800 Sobic008G100000--Sobic001G058900 Sobic008G094600 Sobic008G094600 Sobic008G100000--Sobic008G094600 Sobic004G002350 Sobic004G002350 Sobic008G100000--Sobic004G002350 Sobic008G100000--Sobic010G005300 Sobic002G286900 Sobic002G286900 Sobic008G100000--Sobic002G286900 Sobic008G100000--Sobic002G304900 Sobic008G100000--Sobic008G108601 Sobic001G039400--Sobic003G249700 Sobic001G039400--Sobic003G109600 Sobic001G039400--Sobic010G069400 Sobic001G039400--Sobic002G304900 Sobic001G039400--Sobic009G233400 Sobic009G173500 Sobic009G173500 Sobic001G039400--Sobic009G173500 Sobic001G039400--Sobic007G019400 Sobic002G047600 Sobic002G047600 Sobic001G039400--Sobic002G047600 Sobic001G039400--Sobic005G050500 Sobic008G135000--Sobic001G058900 Sobic008G135000--Sobic009G233400 Sobic008G135000--Sobic002G304900 Sobic008G135000--Sobic002G115000 Sobic001G057300 Sobic001G057300 Sobic008G135000--Sobic001G057300 Sobic009G191200 Sobic009G191200 Sobic008G135000--Sobic009G191200 Sobic008G135000--Sobic001G334300 Sobic008G135000--Sobic001G085400 Sobic008G135000--Sobic010G069400 Sobic002G304900--Sobic001G085400 Sobic002G304900--Sobic009G233400 Sobic002G304900--Sobic001G058900 Sobic002G304900--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic002G304900--Sobic009G179100 Sobic002G304900--Sobic005G050500 Sobic003G387900 Sobic003G387900 Sobic002G304900--Sobic003G387900 Sobic002G304900--Sobic010G069400 Sobic002G304900--Sobic001G039400 Sobic001G225700--Sobic003G249700 Sobic006G081100 Sobic006G081100 Sobic001G225700--Sobic006G081100 Sobic001G225700--Sobic008G108601 Sobic007G178600 Sobic007G178600 Sobic001G225700--Sobic007G178600 Sobic001G225700--Sobic002G047600 Sobic001G225700--Sobic002G286900 Sobic001G225700--Sobic002G049300 Sobic010G251600 Sobic010G251600 Sobic001G225700--Sobic010G251600 Sobic001G225700--Sobic002G115000
Octagon: transcription factors


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