Gene annotation
Transcriptome id Sobic.004G103700.2,Sobic.004G103700.1
Synonym RPL10B, Sb04g008500
Functional annotation ribosomal protein, putative, expressed
UniProt C5XYN1 , A0A1Z5RLT7
Pfam PF00252
Panther DB PTHR11726 PTHR11726:SF15
NCBI CDD KOG0857; 60s ribosomal protein L10
KEGG Orthology K02866; RP-L10e, large subunit ribosomal protein L10e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G26910 : Ribosomal protein L16p/L10e family protein
RAP-DB (Rice) LOC_Os11g11390.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a017348 , Zm00025a007151
Brachypodium KQK07306 , KQJ88920
Barley HORVU4Hr1G016190.8 , HORVU4Hr1G016190.3 , HORVU4Hr1G016190.2 , HORVU4Hr1G016190.1 , HORVU4Hr1G016190.7 , HORVU4Hr1G016190.6 , HORVU4Hr1G016190.5 , HORVU4Hr1G016190.4
Wheat TraesCS1B02G132700 , TraesCS4B02G108400 , TraesCS4A02G204800 , TraesCS4D02G105600 , TraesCS1A02G112500 , TraesCS1D02G114100
Populus PNS91835


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cDNA sequences
Sobic.004G103700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
2 Sobic.001G172000 expressed protein -
3 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
4 Sobic.002G135200 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
5 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
6 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
7 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
8 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
9 Sobic.010G150575 - -
10 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
11 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
12 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
13 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
14 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
15 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
16 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
17 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
18 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
19 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
20 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e


Gene co-expression network
sample Sobic004G103700 Sobic004G103700 Sobic001G025600 Sobic001G025600 Sobic004G103700--Sobic001G025600 Sobic001G172000 Sobic001G172000 Sobic004G103700--Sobic001G172000 Sobic006G010600 Sobic006G010600 Sobic004G103700--Sobic006G010600 Sobic002G135200 Sobic002G135200 Sobic004G103700--Sobic002G135200 Sobic001G018800 Sobic001G018800 Sobic004G103700--Sobic001G018800 Sobic003G129800 Sobic003G129800 Sobic004G103700--Sobic003G129800 Sobic007G134000 Sobic007G134000 Sobic004G103700--Sobic007G134000 Sobic002G222900 Sobic002G222900 Sobic004G103700--Sobic002G222900 Sobic010G150575 Sobic010G150575 Sobic004G103700--Sobic010G150575 Sobic001G025600--Sobic004G103700 Sobic001G025600--Sobic001G172000 Sobic001G481700 Sobic001G481700 Sobic001G025600--Sobic001G481700 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic004G224900 Sobic004G224900 Sobic001G025600--Sobic004G224900 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic001G014500 Sobic001G014500 Sobic001G172000--Sobic001G014500 Sobic005G110800 Sobic005G110800 Sobic001G172000--Sobic005G110800 Sobic009G119900 Sobic009G119900 Sobic001G172000--Sobic009G119900 Sobic001G172000--Sobic001G025600 Sobic001G377800 Sobic001G377800 Sobic001G172000--Sobic001G377800 Sobic006G081100 Sobic006G081100 Sobic001G172000--Sobic006G081100 Sobic001G172000--Sobic004G103700 Sobic007G019400 Sobic007G019400 Sobic001G172000--Sobic007G019400 Sobic003G249700 Sobic003G249700 Sobic001G172000--Sobic003G249700 Sobic006G010600--Sobic004G103700 Sobic001G445800 Sobic001G445800 Sobic006G010600--Sobic001G445800 Sobic004G145801 Sobic004G145801 Sobic006G010600--Sobic004G145801 Sobic006G010600--Sobic001G172000 Sobic010G204600 Sobic010G204600 Sobic006G010600--Sobic010G204600 Sobic003G368500 Sobic003G368500 Sobic006G010600--Sobic003G368500 Sobic003G181500 Sobic003G181500 Sobic006G010600--Sobic003G181500 Sobic002G078400 Sobic002G078400 Sobic006G010600--Sobic002G078400 Sobic004G310300 Sobic004G310300 Sobic006G010600--Sobic004G310300 Sobic004G198400 Sobic004G198400 Sobic002G135200--Sobic004G198400 Sobic002G374900 Sobic002G374900 Sobic002G135200--Sobic002G374900 Sobic002G379500 Sobic002G379500 Sobic002G135200--Sobic002G379500 Sobic001G011200 Sobic001G011200 Sobic002G135200--Sobic001G011200 Sobic001G175300 Sobic001G175300 Sobic002G135200--Sobic001G175300 Sobic007G018300 Sobic007G018300 Sobic002G135200--Sobic007G018300 Sobic009G223300 Sobic009G223300 Sobic002G135200--Sobic009G223300 Sobic001G091801 Sobic001G091801 Sobic002G135200--Sobic001G091801 Sobic001G533500 Sobic001G533500 Sobic002G135200--Sobic001G533500 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic001G128400 Sobic001G128400 Sobic003G129800--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic003G129800--Sobic005G111100 Sobic002G304900 Sobic002G304900 Sobic003G129800--Sobic002G304900 Sobic003G129800--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic003G129800--Sobic001G058900 Sobic003G129800--Sobic001G513500 Sobic003G129800--Sobic009G223300 Sobic004G066800 Sobic004G066800 Sobic003G129800--Sobic004G066800 Sobic005G050500 Sobic005G050500 Sobic003G129800--Sobic005G050500 Sobic001G134400 Sobic001G134400 Sobic007G134000--Sobic001G134400 Sobic003G155400 Sobic003G155400 Sobic007G134000--Sobic003G155400 Sobic002G296200 Sobic002G296200 Sobic007G134000--Sobic002G296200 Sobic007G051000 Sobic007G051000 Sobic007G134000--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic007G134000--Sobic001G018500 Sobic006G083500 Sobic006G083500 Sobic007G134000--Sobic006G083500 Sobic007G134000--Sobic003G129800 Sobic003G215700 Sobic003G215700 Sobic007G134000--Sobic003G215700 Sobic004G211833 Sobic004G211833 Sobic007G134000--Sobic004G211833 Sobic002G222900--Sobic003G155400 Sobic001G224400 Sobic001G224400 Sobic002G222900--Sobic001G224400 Sobic002G222900--Sobic007G134000 Sobic010G154700 Sobic010G154700 Sobic002G222900--Sobic010G154700 Sobic007G068000 Sobic007G068000 Sobic002G222900--Sobic007G068000 Sobic010G225300 Sobic010G225300 Sobic002G222900--Sobic010G225300 Sobic001G459200 Sobic001G459200 Sobic002G222900--Sobic001G459200 Sobic002G222900--Sobic001G128400 Sobic002G222900--Sobic007G051000 Sobic010G150575--Sobic001G011200 Sobic003G321700 Sobic003G321700 Sobic010G150575--Sobic003G321700 Sobic001G016400 Sobic001G016400 Sobic010G150575--Sobic001G016400 Sobic010G150575--Sobic001G091801 Sobic010G150575--Sobic004G198400 Sobic010G150575--Sobic002G374900 Sobic010G150575--Sobic009G166500 Sobic010G150575--Sobic001G018800 Sobic010G150575--Sobic004G145801
Octagon: transcription factors


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