Gene annotation
Transcriptome id Sobic.002G222900.1
Synonym Sb02g026370
Functional annotation transmembrane protein 50A, putative, expressed
UniProt C5X284
Pfam PF05255
Panther DB PTHR13180 PTHR13180:SF3
NCBI CDD KOG3393; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G36980 : -
RAP-DB (Rice) LOC_Os09g27960.1 : transmembrane protein 50A, putative, expressed
MaizeGDB (Corn) Zm00025a014037
Brachypodium KQJ90490 , KQJ90489 , KQJ90488
Barley HORVU5Hr1G067740.2 , HORVU5Hr1G067740.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G222900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
2 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
3 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
4 Sobic.010G154700 - -
5 Sobic.007G068000 postsynaptic protein CRIPT, putative, expressed -
6 Sobic.010G225300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
7 Sobic.001G459200 MYB family transcription factor, putative, expressed -
8 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
9 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
10 Sobic.004G103700 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
11 Sobic.001G533300 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
12 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
13 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
14 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
15 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
16 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
17 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
18 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
19 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
20 Sobic.001G445800 expressed protein -


Gene co-expression network
sample Sobic002G222900 Sobic002G222900 Sobic003G155400 Sobic003G155400 Sobic002G222900--Sobic003G155400 Sobic001G224400 Sobic001G224400 Sobic002G222900--Sobic001G224400 Sobic007G134000 Sobic007G134000 Sobic002G222900--Sobic007G134000 Sobic010G154700 Sobic010G154700 Sobic002G222900--Sobic010G154700 Sobic007G068000 Sobic007G068000 Sobic002G222900--Sobic007G068000 Sobic010G225300 Sobic010G225300 Sobic002G222900--Sobic010G225300 Sobic001G459200 Sobic001G459200 Sobic002G222900--Sobic001G459200 Sobic001G128400 Sobic001G128400 Sobic002G222900--Sobic001G128400 Sobic007G051000 Sobic007G051000 Sobic002G222900--Sobic007G051000 Sobic003G155400--Sobic010G154700 Sobic003G209000 Sobic003G209000 Sobic003G155400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic003G155400--Sobic007G051000 Sobic010G204500 Sobic010G204500 Sobic003G155400--Sobic010G204500 Sobic003G215700 Sobic003G215700 Sobic003G155400--Sobic003G215700 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic001G224400--Sobic002G222900 Sobic001G134400 Sobic001G134400 Sobic007G134000--Sobic001G134400 Sobic007G134000--Sobic003G155400 Sobic002G296200 Sobic002G296200 Sobic007G134000--Sobic002G296200 Sobic007G134000--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic007G134000--Sobic001G018500 Sobic006G083500 Sobic006G083500 Sobic007G134000--Sobic006G083500 Sobic003G129800 Sobic003G129800 Sobic007G134000--Sobic003G129800 Sobic007G134000--Sobic003G215700 Sobic004G211833 Sobic004G211833 Sobic007G134000--Sobic004G211833 Sobic001G048832 Sobic001G048832 Sobic010G154700--Sobic001G048832 Sobic010G154700--Sobic001G132100 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic010G154700--Sobic003G155400 Sobic010G154700--Sobic009G119900 Sobic002G190900 Sobic002G190900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic007G068000--Sobic002G222900 Sobic001G501200 Sobic001G501200 Sobic007G068000--Sobic001G501200 Sobic004G265700 Sobic004G265700 Sobic007G068000--Sobic004G265700 Sobic003G362400 Sobic003G362400 Sobic007G068000--Sobic003G362400 Sobic007G068000--Sobic008G189300 Sobic007G091000 Sobic007G091000 Sobic007G068000--Sobic007G091000 Sobic004G103700 Sobic004G103700 Sobic007G068000--Sobic004G103700 Sobic007G068000--Sobic001G224400 Sobic002G078400 Sobic002G078400 Sobic007G068000--Sobic002G078400 Sobic010G225300--Sobic002G222900 Sobic010G225300--Sobic001G128400 Sobic001G066700 Sobic001G066700 Sobic010G225300--Sobic001G066700 Sobic005G111100 Sobic005G111100 Sobic010G225300--Sobic005G111100 Sobic010G225300--Sobic003G155400 Sobic002G218000 Sobic002G218000 Sobic010G225300--Sobic002G218000 Sobic010G225300--Sobic001G459200 Sobic010G225300--Sobic007G091000 Sobic001G067601 Sobic001G067601 Sobic010G225300--Sobic001G067601 Sobic009G185800 Sobic009G185800 Sobic001G459200--Sobic009G185800 Sobic003G253000 Sobic003G253000 Sobic001G459200--Sobic003G253000 Sobic001G499300 Sobic001G499300 Sobic001G459200--Sobic001G499300 Sobic004G055200 Sobic004G055200 Sobic001G459200--Sobic004G055200 Sobic002G267500 Sobic002G267500 Sobic001G459200--Sobic002G267500 Sobic002G046100 Sobic002G046100 Sobic001G459200--Sobic002G046100 Sobic004G272800 Sobic004G272800 Sobic001G459200--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic001G459200--Sobic003G181500 Sobic003G130800 Sobic003G130800 Sobic001G459200--Sobic003G130800 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic010G054200 Sobic010G054200 Sobic001G128400--Sobic010G054200 Sobic003G280700 Sobic003G280700 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600 Sobic010G012500 Sobic010G012500 Sobic007G051000--Sobic010G012500 Sobic007G051000--Sobic009G176000 Sobic007G051000--Sobic002G398901 Sobic007G051000--Sobic004G211833 Sobic007G051000--Sobic002G190900 Sobic007G051000--Sobic006G083500 Sobic007G051000--Sobic001G018500 Sobic007G051000--Sobic003G209000 Sobic007G051000--Sobic010G204500
Octagon: transcription factors


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