Gene annotation
Transcriptome id Sobic.004G155100.1
Synonym GAMMACAL2, Sb04g020630
Functional annotation uncharacterized protein MJ0304, putative, expressed
UniProt C5XSL6
Pfam -
Panther DB PTHR13061 PTHR13061:SF0
NCBI CDD KOG3121; Dynactin, subunit p25
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48680 : gamma carbonic anhydrase-like 2
RAP-DB (Rice) LOC_Os02g30460.1 : uncharacterized protein MJ0304, putative, expressed
MaizeGDB (Corn) Zm00025a031360 , Zm00025a020399
Brachypodium KQJ99582
Barley HORVU6Hr1G044700.4 , HORVU6Hr1G044700.3 , HORVU6Hr1G044700.2 , HORVU6Hr1G044700.1
Wheat TraesCS6A02G188800 , TraesCS6A02G188800 , TraesCS6B02G215700 , TraesCS6B02G215700 , TraesCS6D02G177500 , TraesCS6D02G177500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
2 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
3 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
4 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
5 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
6 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
7 Sobic.009G240700 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
8 Sobic.001G206700 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
9 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
10 Sobic.009G215300 fiber protein Fb11, putative, expressed -
11 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
12 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
13 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
14 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
15 Sobic.009G211900 expressed protein -
16 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
17 Sobic.007G159700 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
18 Sobic.003G238500 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
19 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
20 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -


Gene co-expression network
sample Sobic004G155100 Sobic004G155100 Sobic003G135600 Sobic003G135600 Sobic004G155100--Sobic003G135600 Sobic002G309700 Sobic002G309700 Sobic004G155100--Sobic002G309700 Sobic002G395000 Sobic002G395000 Sobic004G155100--Sobic002G395000 Sobic009G224400 Sobic009G224400 Sobic004G155100--Sobic009G224400 Sobic004G260200 Sobic004G260200 Sobic004G155100--Sobic004G260200 Sobic001G073600 Sobic001G073600 Sobic004G155100--Sobic001G073600 Sobic009G240700 Sobic009G240700 Sobic004G155100--Sobic009G240700 Sobic001G206700 Sobic001G206700 Sobic004G155100--Sobic001G206700 Sobic002G180300 Sobic002G180300 Sobic004G155100--Sobic002G180300 Sobic003G135600--Sobic004G155100 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic003G135600--Sobic002G309700 Sobic009G191400 Sobic009G191400 Sobic003G135600--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic003G135600--Sobic004G260200 Sobic002G309700--Sobic004G260200 Sobic001G047800 Sobic001G047800 Sobic002G309700--Sobic001G047800 Sobic002G356400 Sobic002G356400 Sobic002G309700--Sobic002G356400 Sobic009G215300 Sobic009G215300 Sobic002G309700--Sobic009G215300 Sobic001G404800 Sobic001G404800 Sobic002G309700--Sobic001G404800 Sobic001G074700 Sobic001G074700 Sobic002G309700--Sobic001G074700 Sobic002G296200 Sobic002G296200 Sobic002G309700--Sobic002G296200 Sobic001G465800 Sobic001G465800 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic002G395000--Sobic004G260200 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic002G395000--Sobic004G155100 Sobic007G023400 Sobic007G023400 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic009G224400--Sobic002G395000 Sobic007G119600 Sobic007G119600 Sobic009G224400--Sobic007G119600 Sobic009G224400--Sobic003G135600 Sobic001G458800 Sobic001G458800 Sobic009G224400--Sobic001G458800 Sobic009G224400--Sobic004G155100 Sobic003G034900 Sobic003G034900 Sobic009G224400--Sobic003G034900 Sobic002G262200 Sobic002G262200 Sobic009G224400--Sobic002G262200 Sobic004G260200--Sobic002G309700 Sobic004G260200--Sobic001G047800 Sobic004G260200--Sobic001G465800 Sobic004G260200--Sobic002G395000 Sobic004G260200--Sobic002G356400 Sobic004G260200--Sobic001G404800 Sobic004G260200--Sobic009G215300 Sobic002G263100 Sobic002G263100 Sobic004G260200--Sobic002G263100 Sobic004G260200--Sobic001G074700 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100 Sobic003G170300 Sobic003G170300 Sobic009G240700--Sobic003G170300 Sobic009G240700--Sobic004G155100 Sobic009G240700--Sobic003G238500 Sobic001G473400 Sobic001G473400 Sobic009G240700--Sobic001G473400 Sobic009G240700--Sobic002G395000 Sobic009G240700--Sobic002G078300 Sobic001G286200 Sobic001G286200 Sobic009G240700--Sobic001G286200 Sobic010G264300 Sobic010G264300 Sobic009G240700--Sobic010G264300 Sobic001G282500 Sobic001G282500 Sobic009G240700--Sobic001G282500 Sobic009G117200 Sobic009G117200 Sobic001G206700--Sobic009G117200 Sobic001G206700--Sobic009G215300 Sobic001G206700--Sobic001G181500 Sobic001G206700--Sobic004G155100 Sobic001G206700--Sobic003G135600 Sobic001G206700--Sobic001G073600 Sobic001G206700--Sobic009G211900 Sobic001G206700--Sobic009G191400 Sobic001G206700--Sobic002G309700 Sobic002G180300--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic002G180300--Sobic006G013000 Sobic002G180300--Sobic002G356400 Sobic009G179100 Sobic009G179100 Sobic002G180300--Sobic009G179100 Sobic009G115700 Sobic009G115700 Sobic002G180300--Sobic009G115700 Sobic002G180300--Sobic010G264300 Sobic002G180300--Sobic001G404800 Sobic001G370700 Sobic001G370700 Sobic002G180300--Sobic001G370700 Sobic002G308300 Sobic002G308300 Sobic002G180300--Sobic002G308300
Octagon: transcription factors


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