Gene annotation
Transcriptome id Sobic.001G206700.1
Synonym
Functional annotation succinate dehydrogenase subunit 3, putative, expressed
UniProt A0A1B6QK12
Pfam PF01127
Panther DB PTHR10978
NCBI CDD -
KEGG Orthology K00236; SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
Gene Ontology GO:0016627; oxidoreductase activity, acting on the CH-CH group of donors


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g33680.1 : succinate dehydrogenase subunit 3, putative, expressed
MaizeGDB (Corn) Zm00025a017548 , Zm00025a006473
Brachypodium -
Barley -
Wheat TraesCS2A02G573200 , TraesCS2D02G584300
Populus -


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cDNA sequences
Sobic.001G206700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G117200 expressed protein -
2 Sobic.009G215300 fiber protein Fb11, putative, expressed -
3 Sobic.001G181500 expressed protein -
4 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
5 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
6 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
7 Sobic.009G211900 expressed protein -
8 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
9 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
10 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
11 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
12 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
13 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
14 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
15 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
16 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
17 Sobic.002G262200 expressed protein -
18 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
19 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
20 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -


Gene co-expression network
sample Sobic001G206700 Sobic001G206700 Sobic009G117200 Sobic009G117200 Sobic001G206700--Sobic009G117200 Sobic009G215300 Sobic009G215300 Sobic001G206700--Sobic009G215300 Sobic001G181500 Sobic001G181500 Sobic001G206700--Sobic001G181500 Sobic004G155100 Sobic004G155100 Sobic001G206700--Sobic004G155100 Sobic003G135600 Sobic003G135600 Sobic001G206700--Sobic003G135600 Sobic001G073600 Sobic001G073600 Sobic001G206700--Sobic001G073600 Sobic009G211900 Sobic009G211900 Sobic001G206700--Sobic009G211900 Sobic009G191400 Sobic009G191400 Sobic001G206700--Sobic009G191400 Sobic002G309700 Sobic002G309700 Sobic001G206700--Sobic002G309700 Sobic009G117200--Sobic001G206700 Sobic004G056400 Sobic004G056400 Sobic009G117200--Sobic004G056400 Sobic003G428200 Sobic003G428200 Sobic009G117200--Sobic003G428200 Sobic004G344800 Sobic004G344800 Sobic009G117200--Sobic004G344800 Sobic009G117200--Sobic001G073600 Sobic009G117200--Sobic009G211900 Sobic003G096000 Sobic003G096000 Sobic009G117200--Sobic003G096000 Sobic009G117200--Sobic002G309700 Sobic006G013000 Sobic006G013000 Sobic009G117200--Sobic006G013000 Sobic009G215300--Sobic002G309700 Sobic009G215300--Sobic001G181500 Sobic001G047800 Sobic001G047800 Sobic009G215300--Sobic001G047800 Sobic004G260200 Sobic004G260200 Sobic009G215300--Sobic004G260200 Sobic009G215300--Sobic009G211900 Sobic007G013900 Sobic007G013900 Sobic009G215300--Sobic007G013900 Sobic001G282500 Sobic001G282500 Sobic009G215300--Sobic001G282500 Sobic009G215300--Sobic003G135600 Sobic001G404800 Sobic001G404800 Sobic009G215300--Sobic001G404800 Sobic001G181500--Sobic009G215300 Sobic001G181500--Sobic009G211900 Sobic001G181500--Sobic003G135600 Sobic001G181500--Sobic002G309700 Sobic001G181500--Sobic001G206700 Sobic004G030000 Sobic004G030000 Sobic001G181500--Sobic004G030000 Sobic001G181500--Sobic001G282500 Sobic007G012900 Sobic007G012900 Sobic001G181500--Sobic007G012900 Sobic001G181500--Sobic004G260200 Sobic004G155100--Sobic003G135600 Sobic004G155100--Sobic002G309700 Sobic002G395000 Sobic002G395000 Sobic004G155100--Sobic002G395000 Sobic009G224400 Sobic009G224400 Sobic004G155100--Sobic009G224400 Sobic004G155100--Sobic004G260200 Sobic004G155100--Sobic001G073600 Sobic009G240700 Sobic009G240700 Sobic004G155100--Sobic009G240700 Sobic004G155100--Sobic001G206700 Sobic002G180300 Sobic002G180300 Sobic004G155100--Sobic002G180300 Sobic003G135600--Sobic004G155100 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic003G135600--Sobic001G181500 Sobic003G135600--Sobic009G211900 Sobic003G135600--Sobic004G260200 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100 Sobic009G211900--Sobic009G215300 Sobic006G124300 Sobic006G124300 Sobic009G211900--Sobic006G124300 Sobic009G211900--Sobic001G181500 Sobic006G203900 Sobic006G203900 Sobic009G211900--Sobic006G203900 Sobic009G211900--Sobic003G135600 Sobic009G211900--Sobic002G309700 Sobic008G136800 Sobic008G136800 Sobic009G211900--Sobic008G136800 Sobic009G211900--Sobic001G073600 Sobic009G211900--Sobic004G260200 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G356400 Sobic002G356400 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic001G074700 Sobic001G074700 Sobic002G309700--Sobic001G074700 Sobic002G296200 Sobic002G296200 Sobic002G309700--Sobic002G296200 Sobic001G465800 Sobic001G465800 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700
Octagon: transcription factors


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