Gene annotation
Transcriptome id Sobic.002G395000.1
Synonym GAMMACA2, Sb02g041030, APFI
Functional annotation bacterial transferase hexapeptide domain containing protein, expressed
UniProt C5X3Z0
Pfam PF00132
Panther DB PTHR13061 PTHR13061:SF10
NCBI CDD KOG4042; Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47260 : gamma carbonic anhydrase 2
RAP-DB (Rice) LOC_Os12g07220.1 : bacterial transferase hexapeptide domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048956
Brachypodium KQK14957
Barley HORVU2Hr1G025530.1 , HORVU2Hr1G025530.3 , HORVU2Hr1G025530.2
Wheat TraesCS2A02G144200 , TraesCS2D02G148200 , TraesCS2B02G169200
Populus -


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cDNA sequences
Sobic.002G395000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
2 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
3 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
4 Sobic.003G238500 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
5 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
6 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
7 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
8 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
9 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
10 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
11 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
12 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
13 Sobic.002G262200 expressed protein -
14 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
15 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
16 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
17 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
18 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
19 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
20 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit


Gene co-expression network
sample Sobic002G395000 Sobic002G395000 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic009G224400 Sobic009G224400 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic001G073600 Sobic001G073600 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic007G023400 Sobic007G023400 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic004G260200--Sobic002G309700 Sobic001G047800 Sobic001G047800 Sobic004G260200--Sobic001G047800 Sobic001G465800 Sobic001G465800 Sobic004G260200--Sobic001G465800 Sobic004G260200--Sobic002G395000 Sobic002G356400 Sobic002G356400 Sobic004G260200--Sobic002G356400 Sobic001G404800 Sobic001G404800 Sobic004G260200--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic004G260200--Sobic009G215300 Sobic002G263100 Sobic002G263100 Sobic004G260200--Sobic002G263100 Sobic001G074700 Sobic001G074700 Sobic004G260200--Sobic001G074700 Sobic003G135600--Sobic004G155100 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic003G135600--Sobic002G309700 Sobic009G191400 Sobic009G191400 Sobic003G135600--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic003G135600--Sobic004G260200 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic009G224400--Sobic002G395000 Sobic007G119600 Sobic007G119600 Sobic009G224400--Sobic007G119600 Sobic009G224400--Sobic003G135600 Sobic001G458800 Sobic001G458800 Sobic009G224400--Sobic001G458800 Sobic009G224400--Sobic004G155100 Sobic003G034900 Sobic003G034900 Sobic009G224400--Sobic003G034900 Sobic002G262200 Sobic002G262200 Sobic009G224400--Sobic002G262200 Sobic003G238500--Sobic002G395000 Sobic003G322300 Sobic003G322300 Sobic003G238500--Sobic003G322300 Sobic003G238500--Sobic004G260200 Sobic004G294900 Sobic004G294900 Sobic003G238500--Sobic004G294900 Sobic003G238500--Sobic004G155100 Sobic009G240700 Sobic009G240700 Sobic003G238500--Sobic009G240700 Sobic006G203900 Sobic006G203900 Sobic003G238500--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic003G238500--Sobic008G084100 Sobic003G238500--Sobic001G073600 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G296200 Sobic002G296200 Sobic002G309700--Sobic002G296200 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100 Sobic004G155100--Sobic003G135600 Sobic004G155100--Sobic002G309700 Sobic004G155100--Sobic002G395000 Sobic004G155100--Sobic009G224400 Sobic004G155100--Sobic004G260200 Sobic004G155100--Sobic001G073600 Sobic004G155100--Sobic009G240700 Sobic001G206700 Sobic001G206700 Sobic004G155100--Sobic001G206700 Sobic002G180300 Sobic002G180300 Sobic004G155100--Sobic002G180300 Sobic007G023400--Sobic002G395000 Sobic010G032600 Sobic010G032600 Sobic007G023400--Sobic010G032600 Sobic007G023400--Sobic009G224400 Sobic007G171500 Sobic007G171500 Sobic007G023400--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic007G023400--Sobic004G297700 Sobic007G023400--Sobic003G135600 Sobic004G202100 Sobic004G202100 Sobic007G023400--Sobic004G202100 Sobic002G217500 Sobic002G217500 Sobic007G023400--Sobic002G217500 Sobic007G023400--Sobic001G073600 Sobic001G286200 Sobic001G286200 Sobic002G078300--Sobic001G286200 Sobic010G264300 Sobic010G264300 Sobic002G078300--Sobic010G264300 Sobic002G078300--Sobic004G260200 Sobic002G078300--Sobic002G395000 Sobic002G078300--Sobic002G309700 Sobic007G211500 Sobic007G211500 Sobic002G078300--Sobic007G211500 Sobic002G078300--Sobic002G356400 Sobic001G370700 Sobic001G370700 Sobic002G078300--Sobic001G370700 Sobic002G308300 Sobic002G308300 Sobic002G078300--Sobic002G308300
Octagon: transcription factors


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