Gene annotation
Transcriptome id Sobic.004G202100.1
Synonym IDH1, Sb04g024840, IDH-I
Functional annotation dehydrogenase, putative, expressed
UniProt C5XWJ7
Pfam PF00180
Panther DB PTHR11835 PTHR11835:SF51
NCBI CDD -
KEGG Orthology K00030; isocitrate dehydrogenase (NAD+)
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT4G35260 : isocitrate dehydrogenase 1
RAP-DB (Rice) LOC_Os02g38200.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a031832 , Zm00025a056307 , Zm00025a021313
Brachypodium KQJ83166 , KQJ83167 , KQK00162
Barley HORVU2Hr1G082800.2 , HORVU2Hr1G082800.3 , HORVU2Hr1G082800.1
Wheat TraesCS2B02G356300 , TraesCS6B02G238500 , TraesCS2B02G356300 , TraesCS6A02G209600 , TraesCS2A02G325600 , TraesCS2A02G325600 , TraesCS6D02G192900 , TraesCS2D02G337100 , TraesCS2D02G337100
Populus -


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cDNA sequences
Sobic.004G202100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
3 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
4 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
5 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
6 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
7 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
8 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
9 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
10 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
11 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
12 Sobic.009G001900 expressed protein -
13 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
14 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
15 Sobic.003G305100 expressed protein -
16 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
17 Sobic.001G465800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
18 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
19 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
20 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4


Gene co-expression network
sample Sobic004G202100 Sobic004G202100 Sobic001G031900 Sobic001G031900 Sobic004G202100--Sobic001G031900 Sobic002G395000 Sobic002G395000 Sobic004G202100--Sobic002G395000 Sobic004G262300 Sobic004G262300 Sobic004G202100--Sobic004G262300 Sobic006G058900 Sobic006G058900 Sobic004G202100--Sobic006G058900 Sobic001G282500 Sobic001G282500 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic002G309500 Sobic002G309500 Sobic004G202100--Sobic002G309500 Sobic004G297700 Sobic004G297700 Sobic004G202100--Sobic004G297700 Sobic007G023400 Sobic007G023400 Sobic004G202100--Sobic007G023400 Sobic001G031900--Sobic006G058900 Sobic001G031900--Sobic004G202100 Sobic001G031900--Sobic002G395000 Sobic001G350600 Sobic001G350600 Sobic001G031900--Sobic001G350600 Sobic004G344800 Sobic004G344800 Sobic001G031900--Sobic004G344800 Sobic003G152900 Sobic003G152900 Sobic001G031900--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic001G031900--Sobic004G170400 Sobic001G458800 Sobic001G458800 Sobic001G031900--Sobic001G458800 Sobic004G030000 Sobic004G030000 Sobic001G031900--Sobic004G030000 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic009G224400 Sobic009G224400 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic001G073600 Sobic001G073600 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic004G262300--Sobic004G202100 Sobic001G060300 Sobic001G060300 Sobic004G262300--Sobic001G060300 Sobic001G342200 Sobic001G342200 Sobic004G262300--Sobic001G342200 Sobic004G262300--Sobic001G031900 Sobic010G038700 Sobic010G038700 Sobic004G262300--Sobic010G038700 Sobic009G001900 Sobic009G001900 Sobic004G262300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic004G262300--Sobic004G066800 Sobic002G131600 Sobic002G131600 Sobic004G262300--Sobic002G131600 Sobic007G092100 Sobic007G092100 Sobic004G262300--Sobic007G092100 Sobic006G058900--Sobic001G031900 Sobic006G058900--Sobic001G458800 Sobic006G058900--Sobic004G202100 Sobic006G058900--Sobic002G395000 Sobic007G171500 Sobic007G171500 Sobic006G058900--Sobic007G171500 Sobic006G058900--Sobic002G309500 Sobic006G058900--Sobic004G344800 Sobic003G034900 Sobic003G034900 Sobic006G058900--Sobic003G034900 Sobic003G185500 Sobic003G185500 Sobic006G058900--Sobic003G185500 Sobic001G282500--Sobic002G309700 Sobic009G215300 Sobic009G215300 Sobic001G282500--Sobic009G215300 Sobic001G282500--Sobic004G260200 Sobic002G356400 Sobic002G356400 Sobic001G282500--Sobic002G356400 Sobic001G282500--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G282500--Sobic002G308300 Sobic001G181500 Sobic001G181500 Sobic001G282500--Sobic001G181500 Sobic001G282500--Sobic003G135600 Sobic001G282500--Sobic001G350600 Sobic003G305100 Sobic003G305100 Sobic006G231500--Sobic003G305100 Sobic009G212300 Sobic009G212300 Sobic006G231500--Sobic009G212300 Sobic006G231500--Sobic009G001900 Sobic006G231500--Sobic004G202100 Sobic004G012800 Sobic004G012800 Sobic006G231500--Sobic004G012800 Sobic006G109700 Sobic006G109700 Sobic006G231500--Sobic006G109700 Sobic007G091000 Sobic007G091000 Sobic006G231500--Sobic007G091000 Sobic002G296200 Sobic002G296200 Sobic006G231500--Sobic002G296200 Sobic001G286300 Sobic001G286300 Sobic006G231500--Sobic001G286300 Sobic002G309500--Sobic006G058900 Sobic002G309500--Sobic004G202100 Sobic001G050700 Sobic001G050700 Sobic002G309500--Sobic001G050700 Sobic007G159700 Sobic007G159700 Sobic002G309500--Sobic007G159700 Sobic002G309500--Sobic002G395000 Sobic002G309500--Sobic001G031900 Sobic002G309500--Sobic004G262300 Sobic003G322300 Sobic003G322300 Sobic002G309500--Sobic003G322300 Sobic002G309500--Sobic004G297700 Sobic004G297700--Sobic007G171500 Sobic010G032600 Sobic010G032600 Sobic004G297700--Sobic010G032600 Sobic006G276700 Sobic006G276700 Sobic004G297700--Sobic006G276700 Sobic002G186300 Sobic002G186300 Sobic004G297700--Sobic002G186300 Sobic004G244000 Sobic004G244000 Sobic004G297700--Sobic004G244000 Sobic004G297700--Sobic007G023400 Sobic001G457000 Sobic001G457000 Sobic004G297700--Sobic001G457000 Sobic004G297700--Sobic004G202100 Sobic004G297700--Sobic003G034900 Sobic007G023400--Sobic002G395000 Sobic007G023400--Sobic010G032600 Sobic007G023400--Sobic009G224400 Sobic007G023400--Sobic007G171500 Sobic007G023400--Sobic004G297700 Sobic007G023400--Sobic003G135600 Sobic007G023400--Sobic004G202100 Sobic002G217500 Sobic002G217500 Sobic007G023400--Sobic002G217500 Sobic007G023400--Sobic001G073600
Octagon: transcription factors


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