Gene annotation
Transcriptome id Sobic.002G309500.1
Synonym Sb02g033930, ATRAB6A, RAB6, RAB6A, ATRABH1B
Functional annotation ras-related protein, putative, expressed
UniProt C5X999
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF474
NCBI CDD KOG0094; GTPase Rab6/YPT6/Ryh1, small G protein superfamily
KEGG Orthology K07893; Ras-related protein Rab-6A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT2G44610 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os07g31370.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a001050 , Zm00025a014724 , Zm00025a048120
Brachypodium KQK16142
Barley HORVU4Hr1G078690.1 , HORVU4Hr1G078690.2 , HORVU4Hr1G078690.3 , HORVU4Hr1G078690.4 , HORVU4Hr1G078690.5 , HORVU4Hr1G078690.6 , HORVU4Hr1G078690.7 , HORVU2Hr1G050270.4 , HORVU2Hr1G050270.2 , HORVU2Hr1G050270.3 , HORVU2Hr1G050270.1
Wheat TraesCS2D02G234600 , TraesCS4A02G407500 , TraesCS4B02G306900 , TraesCS2A02G236600 , TraesCS2A02G236600 , TraesCS4D02G305100 , TraesCS2B02G261200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G309500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
2 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
3 Sobic.001G050700 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
4 Sobic.007G159700 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
5 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
6 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
7 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
8 Sobic.003G322300 expressed protein -
9 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
10 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
11 Sobic.003G238500 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
12 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
13 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
14 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
15 Sobic.004G150200 expressed protein -
16 Sobic.002G262200 expressed protein -
17 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
18 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
19 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
20 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3


Gene co-expression network
sample Sobic002G309500 Sobic002G309500 Sobic006G058900 Sobic006G058900 Sobic002G309500--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic002G309500--Sobic004G202100 Sobic001G050700 Sobic001G050700 Sobic002G309500--Sobic001G050700 Sobic007G159700 Sobic007G159700 Sobic002G309500--Sobic007G159700 Sobic002G395000 Sobic002G395000 Sobic002G309500--Sobic002G395000 Sobic001G031900 Sobic001G031900 Sobic002G309500--Sobic001G031900 Sobic004G262300 Sobic004G262300 Sobic002G309500--Sobic004G262300 Sobic003G322300 Sobic003G322300 Sobic002G309500--Sobic003G322300 Sobic004G297700 Sobic004G297700 Sobic002G309500--Sobic004G297700 Sobic006G058900--Sobic001G031900 Sobic001G458800 Sobic001G458800 Sobic006G058900--Sobic001G458800 Sobic006G058900--Sobic004G202100 Sobic006G058900--Sobic002G395000 Sobic007G171500 Sobic007G171500 Sobic006G058900--Sobic007G171500 Sobic006G058900--Sobic002G309500 Sobic004G344800 Sobic004G344800 Sobic006G058900--Sobic004G344800 Sobic003G034900 Sobic003G034900 Sobic006G058900--Sobic003G034900 Sobic003G185500 Sobic003G185500 Sobic006G058900--Sobic003G185500 Sobic004G202100--Sobic001G031900 Sobic004G202100--Sobic002G395000 Sobic004G202100--Sobic004G262300 Sobic004G202100--Sobic006G058900 Sobic001G282500 Sobic001G282500 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic004G202100--Sobic002G309500 Sobic004G202100--Sobic004G297700 Sobic007G023400 Sobic007G023400 Sobic004G202100--Sobic007G023400 Sobic001G050700--Sobic002G309500 Sobic001G112400 Sobic001G112400 Sobic001G050700--Sobic001G112400 Sobic001G050700--Sobic004G344800 Sobic001G387800 Sobic001G387800 Sobic001G050700--Sobic001G387800 Sobic004G039400 Sobic004G039400 Sobic001G050700--Sobic004G039400 Sobic003G116600 Sobic003G116600 Sobic001G050700--Sobic003G116600 Sobic007G114200 Sobic007G114200 Sobic001G050700--Sobic007G114200 Sobic005G184200 Sobic005G184200 Sobic001G050700--Sobic005G184200 Sobic001G178500 Sobic001G178500 Sobic001G050700--Sobic001G178500 Sobic001G073600 Sobic001G073600 Sobic007G159700--Sobic001G073600 Sobic007G159700--Sobic001G282500 Sobic004G155100 Sobic004G155100 Sobic007G159700--Sobic004G155100 Sobic007G159700--Sobic002G395000 Sobic003G135600 Sobic003G135600 Sobic007G159700--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G159700--Sobic009G191400 Sobic007G159700--Sobic002G309500 Sobic007G159700--Sobic001G458800 Sobic009G224400 Sobic009G224400 Sobic007G159700--Sobic009G224400 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic001G031900--Sobic006G058900 Sobic001G031900--Sobic004G202100 Sobic001G031900--Sobic002G395000 Sobic001G350600 Sobic001G350600 Sobic001G031900--Sobic001G350600 Sobic001G031900--Sobic004G344800 Sobic003G152900 Sobic003G152900 Sobic001G031900--Sobic003G152900 Sobic004G170400 Sobic004G170400 Sobic001G031900--Sobic004G170400 Sobic001G031900--Sobic001G458800 Sobic004G030000 Sobic004G030000 Sobic001G031900--Sobic004G030000 Sobic004G262300--Sobic004G202100 Sobic001G060300 Sobic001G060300 Sobic004G262300--Sobic001G060300 Sobic001G342200 Sobic001G342200 Sobic004G262300--Sobic001G342200 Sobic004G262300--Sobic001G031900 Sobic010G038700 Sobic010G038700 Sobic004G262300--Sobic010G038700 Sobic009G001900 Sobic009G001900 Sobic004G262300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic004G262300--Sobic004G066800 Sobic002G131600 Sobic002G131600 Sobic004G262300--Sobic002G131600 Sobic007G092100 Sobic007G092100 Sobic004G262300--Sobic007G092100 Sobic003G322300--Sobic003G238500 Sobic001G286200 Sobic001G286200 Sobic003G322300--Sobic001G286200 Sobic003G322300--Sobic009G001900 Sobic003G322300--Sobic002G395000 Sobic006G203900 Sobic006G203900 Sobic003G322300--Sobic006G203900 Sobic003G322300--Sobic002G078300 Sobic002G296200 Sobic002G296200 Sobic003G322300--Sobic002G296200 Sobic002G180300 Sobic002G180300 Sobic003G322300--Sobic002G180300 Sobic002G356400 Sobic002G356400 Sobic003G322300--Sobic002G356400 Sobic004G297700--Sobic007G171500 Sobic010G032600 Sobic010G032600 Sobic004G297700--Sobic010G032600 Sobic006G276700 Sobic006G276700 Sobic004G297700--Sobic006G276700 Sobic002G186300 Sobic002G186300 Sobic004G297700--Sobic002G186300 Sobic004G244000 Sobic004G244000 Sobic004G297700--Sobic004G244000 Sobic004G297700--Sobic007G023400 Sobic001G457000 Sobic001G457000 Sobic004G297700--Sobic001G457000 Sobic004G297700--Sobic004G202100 Sobic004G297700--Sobic003G034900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.