Gene annotation
Transcriptome id Sobic.001G050700.2,Sobic.001G050700.4,Sobic.001G050700.3
Synonym Sb01g004650
Functional annotation ribosomal protein L4, putative, expressed
UniProt A0A1Z5S4F1 , A0A1Z5S4G4 , A0A1Z5S4D4
Pfam PF00573
Panther DB PTHR10746
NCBI CDD KOG1624; Mitochondrial/chloroplast ribosomal protein L4
KEGG Orthology K02926; RP-L4, MRPL4, large subunit ribosomal protein L4
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G20060 : Ribosomal protein L4/L1 family
RAP-DB (Rice) LOC_Os11g37510.1 : ribosomal protein L4, putative, expressed
MaizeGDB (Corn) Zm00025a008619
Brachypodium PNT63400 , KQJ88073
Barley HORVU5Hr1G068590.19 , HORVU6Hr1G013230.8 , HORVU5Hr1G068590.13 , HORVU6Hr1G013230.6 , HORVU6Hr1G013230.5 , HORVU6Hr1G013230.4 , HORVU6Hr1G013230.3 , HORVU6Hr1G013230.2 , HORVU6Hr1G013230.1 , HORVU5Hr1G068590.14 , HORVU5Hr1G068590.9 , HORVU5Hr1G068590.8 , HORVU5Hr1G068590.3 , HORVU5Hr1G068590.2 , HORVU5Hr1G068590.1 , HORVU5Hr1G068590.7 , HORVU5Hr1G068590.6 , HORVU5Hr1G068590.5 , HORVU5Hr1G068590.4 , HORVU5Hr1G068590.12 , HORVU5Hr1G068590.11 , HORVU5Hr1G068590.10 , HORVU5Hr1G068590.17 , HORVU5Hr1G068590.22 , HORVU5Hr1G068590.20 , HORVU5Hr1G068590.15
Wheat TraesCS5D02G246400 , TraesCS5A02G239300 , TraesCS6B02G099200 , TraesCSU02G122900 , TraesCS6A02G074600 , TraesCS5B02G237900
Populus -


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cDNA sequences
Sobic.001G050700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
2 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
3 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
4 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
5 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
6 Sobic.003G116600 syntaxin, putative, expressed K08488: syntaxin 7
7 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
8 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
9 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
10 Sobic.001G518500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
11 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
12 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
13 Sobic.001G214200 lysM domain containing protein, putative, expressed -
14 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
15 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
16 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
17 Sobic.001G323300 ethylene-responsive element-binding protein, putative, expressed -
18 Sobic.009G219400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
19 Sobic.002G214900 polygalacturonase, putative, expressed -
20 Sobic.001G050400 expressed protein -


Gene co-expression network
sample Sobic001G050700 Sobic001G050700 Sobic002G309500 Sobic002G309500 Sobic001G050700--Sobic002G309500 Sobic001G112400 Sobic001G112400 Sobic001G050700--Sobic001G112400 Sobic004G344800 Sobic004G344800 Sobic001G050700--Sobic004G344800 Sobic001G387800 Sobic001G387800 Sobic001G050700--Sobic001G387800 Sobic004G039400 Sobic004G039400 Sobic001G050700--Sobic004G039400 Sobic003G116600 Sobic003G116600 Sobic001G050700--Sobic003G116600 Sobic007G114200 Sobic007G114200 Sobic001G050700--Sobic007G114200 Sobic005G184200 Sobic005G184200 Sobic001G050700--Sobic005G184200 Sobic001G178500 Sobic001G178500 Sobic001G050700--Sobic001G178500 Sobic006G058900 Sobic006G058900 Sobic002G309500--Sobic006G058900 Sobic004G202100 Sobic004G202100 Sobic002G309500--Sobic004G202100 Sobic002G309500--Sobic001G050700 Sobic007G159700 Sobic007G159700 Sobic002G309500--Sobic007G159700 Sobic002G395000 Sobic002G395000 Sobic002G309500--Sobic002G395000 Sobic001G031900 Sobic001G031900 Sobic002G309500--Sobic001G031900 Sobic004G262300 Sobic004G262300 Sobic002G309500--Sobic004G262300 Sobic003G322300 Sobic003G322300 Sobic002G309500--Sobic003G322300 Sobic004G297700 Sobic004G297700 Sobic002G309500--Sobic004G297700 Sobic002G262200 Sobic002G262200 Sobic001G112400--Sobic002G262200 Sobic001G443200 Sobic001G443200 Sobic001G112400--Sobic001G443200 Sobic001G112400--Sobic005G184200 Sobic001G378200 Sobic001G378200 Sobic001G112400--Sobic001G378200 Sobic004G347600 Sobic004G347600 Sobic001G112400--Sobic004G347600 Sobic001G112400--Sobic004G039400 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G465400 Sobic001G465400 Sobic001G112400--Sobic001G465400 Sobic001G073600 Sobic001G073600 Sobic004G344800--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic004G344800--Sobic003G135600 Sobic004G159000 Sobic004G159000 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic009G191400 Sobic009G191400 Sobic004G344800--Sobic009G191400 Sobic004G030000 Sobic004G030000 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic004G344800--Sobic002G396700 Sobic004G344800--Sobic001G031900 Sobic003G196200 Sobic003G196200 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G008100 Sobic001G008100 Sobic001G387800--Sobic001G008100 Sobic001G387800--Sobic004G039400 Sobic007G119600 Sobic007G119600 Sobic001G387800--Sobic007G119600 Sobic001G387800--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic001G387800--Sobic002G079700 Sobic007G206300 Sobic007G206300 Sobic001G387800--Sobic007G206300 Sobic001G387800--Sobic001G465400 Sobic004G039400--Sobic001G008100 Sobic004G039400--Sobic001G073600 Sobic010G040900 Sobic010G040900 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic004G039400--Sobic002G262200 Sobic004G039400--Sobic009G191400 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic004G039400--Sobic002G079700 Sobic002G090700 Sobic002G090700 Sobic003G116600--Sobic002G090700 Sobic010G007400 Sobic010G007400 Sobic003G116600--Sobic010G007400 Sobic003G116600--Sobic005G184200 Sobic003G116600--Sobic004G159000 Sobic004G339300 Sobic004G339300 Sobic003G116600--Sobic004G339300 Sobic001G367000 Sobic001G367000 Sobic003G116600--Sobic001G367000 Sobic003G116600--Sobic004G202100 Sobic001G309500 Sobic001G309500 Sobic003G116600--Sobic001G309500 Sobic002G401700 Sobic002G401700 Sobic003G116600--Sobic002G401700 Sobic007G045600 Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic003G367451 Sobic003G367451 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic004G327300 Sobic004G327300 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800 Sobic005G184200--Sobic001G112400 Sobic005G184200--Sobic003G116600 Sobic005G184200--Sobic001G443200 Sobic003G217100 Sobic003G217100 Sobic005G184200--Sobic003G217100 Sobic001G332300 Sobic001G332300 Sobic005G184200--Sobic001G332300 Sobic005G184200--Sobic004G344800 Sobic005G184200--Sobic002G090700 Sobic005G184200--Sobic001G378200 Sobic008G110500 Sobic008G110500 Sobic005G184200--Sobic008G110500 Sobic001G178500--Sobic002G079700 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic001G178500--Sobic010G040900 Sobic001G178500--Sobic007G119600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G178500--Sobic001G443200
Octagon: transcription factors


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