Gene annotation
Transcriptome id Sobic.002G214900.1
Synonym Sb02g025730
Functional annotation polygalacturonase, putative, expressed
UniProt C5XDP3
Pfam PF12708
Panther DB PTHR31339 PTHR31339:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G42950 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os09g26800.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a047141
Brachypodium KQJ90396 , KQJ90395
Barley HORVU5Hr1G062220.12 , HORVU5Hr1G062220.10 , HORVU5Hr1G062220.6 , HORVU5Hr1G062220.7 , HORVU5Hr1G062220.5 , HORVU5Hr1G062220.4 , HORVU5Hr1G062220.3 , HORVU5Hr1G062220.2 , HORVU5Hr1G062220.9 , HORVU5Hr1G062220.8 , HORVU5Hr1G062220.13 , HORVU5Hr1G062220.11
Wheat TraesCS5A02G212900 , TraesCS5D02G219200 , TraesCS5B02G210900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
2 Sobic.006G182100 ORM1, putative, expressed -
3 Sobic.001G409900 transporter, putative, expressed -
4 Sobic.003G368500 Yip1 domain containing protein, expressed -
5 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
6 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
7 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
8 Sobic.007G195701 - -
9 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
10 Sobic.003G217100 Yip1 domain containing protein, expressed -
11 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
12 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
13 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
14 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
15 Sobic.003G023000 CID11, putative, expressed -
16 Sobic.004G269700 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K04708: 3-dehydrosphinganine reductase
17 Sobic.001G441000 erwinia induced protein 2, putative, expressed -
18 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
19 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
20 Sobic.004G284500 ORM1, putative, expressed -


Gene co-expression network
sample Sobic002G214900 Sobic002G214900 Sobic007G114200 Sobic007G114200 Sobic002G214900--Sobic007G114200 Sobic006G182100 Sobic006G182100 Sobic002G214900--Sobic006G182100 Sobic001G409900 Sobic001G409900 Sobic002G214900--Sobic001G409900 Sobic003G368500 Sobic003G368500 Sobic002G214900--Sobic003G368500 Sobic007G115100 Sobic007G115100 Sobic002G214900--Sobic007G115100 Sobic001G403700 Sobic001G403700 Sobic002G214900--Sobic001G403700 Sobic001G224400 Sobic001G224400 Sobic002G214900--Sobic001G224400 Sobic007G195701 Sobic007G195701 Sobic002G214900--Sobic007G195701 Sobic003G362400 Sobic003G362400 Sobic002G214900--Sobic003G362400 Sobic007G045600 Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic003G367451 Sobic003G367451 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic007G114200--Sobic002G214900 Sobic004G327300 Sobic004G327300 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800 Sobic004G284500 Sobic004G284500 Sobic006G182100--Sobic004G284500 Sobic009G033700 Sobic009G033700 Sobic006G182100--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic006G182100--Sobic002G046100 Sobic010G018400 Sobic010G018400 Sobic006G182100--Sobic010G018400 Sobic004G196300 Sobic004G196300 Sobic006G182100--Sobic004G196300 Sobic001G281400 Sobic001G281400 Sobic006G182100--Sobic001G281400 Sobic008G185400 Sobic008G185400 Sobic006G182100--Sobic008G185400 Sobic006G182100--Sobic003G368500 Sobic001G445800 Sobic001G445800 Sobic006G182100--Sobic001G445800 Sobic001G409900--Sobic002G214900 Sobic006G263100 Sobic006G263100 Sobic001G409900--Sobic006G263100 Sobic001G173300 Sobic001G173300 Sobic001G409900--Sobic001G173300 Sobic004G278000 Sobic004G278000 Sobic001G409900--Sobic004G278000 Sobic009G208800 Sobic009G208800 Sobic001G409900--Sobic009G208800 Sobic002G362900 Sobic002G362900 Sobic001G409900--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic001G409900--Sobic007G188100 Sobic001G122500 Sobic001G122500 Sobic001G409900--Sobic001G122500 Sobic003G023500 Sobic003G023500 Sobic001G409900--Sobic003G023500 Sobic010G213400 Sobic010G213400 Sobic003G368500--Sobic010G213400 Sobic003G368500--Sobic010G018400 Sobic003G368500--Sobic001G224400 Sobic003G155400 Sobic003G155400 Sobic003G368500--Sobic003G155400 Sobic004G310300 Sobic004G310300 Sobic003G368500--Sobic004G310300 Sobic003G368500--Sobic004G284500 Sobic005G188100 Sobic005G188100 Sobic003G368500--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic003G368500--Sobic007G051000 Sobic001G418900 Sobic001G418900 Sobic003G368500--Sobic001G418900 Sobic007G115100--Sobic001G418900 Sobic004G269700 Sobic004G269700 Sobic007G115100--Sobic004G269700 Sobic007G115100--Sobic003G155400 Sobic001G505500 Sobic001G505500 Sobic007G115100--Sobic001G505500 Sobic010G153100 Sobic010G153100 Sobic007G115100--Sobic010G153100 Sobic001G342200 Sobic001G342200 Sobic007G115100--Sobic001G342200 Sobic010G023800 Sobic010G023800 Sobic007G115100--Sobic010G023800 Sobic010G154700 Sobic010G154700 Sobic007G115100--Sobic010G154700 Sobic007G115100--Sobic004G138800 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic001G403700--Sobic006G182100 Sobic002G296300 Sobic002G296300 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic001G403700--Sobic002G214900 Sobic001G403700--Sobic010G213400 Sobic001G224400--Sobic003G368500 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic001G224400--Sobic010G154700 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic007G195701--Sobic002G078400 Sobic007G195701--Sobic006G182100 Sobic001G283500 Sobic001G283500 Sobic007G195701--Sobic001G283500 Sobic007G195701--Sobic002G214900 Sobic006G010600 Sobic006G010600 Sobic007G195701--Sobic006G010600 Sobic001G309500 Sobic001G309500 Sobic007G195701--Sobic001G309500 Sobic007G195701--Sobic001G445800 Sobic003G220600 Sobic003G220600 Sobic007G195701--Sobic003G220600 Sobic002G333600 Sobic002G333600 Sobic007G195701--Sobic002G333600 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic005G111100 Sobic005G111100 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic001G331900 Sobic001G331900 Sobic003G362400--Sobic001G331900 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.