Gene annotation
Transcriptome id Sobic.003G217100.1
Synonym Sb03g027600
Functional annotation Yip1 domain containing protein, expressed
UniProt C5XQY6
Pfam PF04893
Panther DB PTHR12822
NCBI CDD KOG3114; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT5G27490 : Integral membrane Yip1 family protein
RAP-DB (Rice) LOC_Os01g42480.1 : Yip1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038485 , Zm00025a028689
Brachypodium KQK08676
Barley HORVU3Hr1G053460.7 , HORVU3Hr1G053460.6 , HORVU3Hr1G053460.5 , HORVU3Hr1G053460.4 , HORVU3Hr1G053460.3 , HORVU3Hr1G053460.2 , HORVU3Hr1G053460.1
Wheat TraesCS3A02G218300 , TraesCS3B02G248800 , TraesCS3D02G234000 , TraesCS3D02G234000
Populus -


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cDNA sequences
Sobic.003G217100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G105100 neighbor of COX4, putative, expressed -
2 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
3 Sobic.008G132800 expressed protein -
4 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
5 Sobic.001G309500 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
6 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
7 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
8 Sobic.001G237500 transporter family protein, putative, expressed -
9 Sobic.001G408100 Yip1 domain containing protein, expressed -
10 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
11 Sobic.004G222600 expressed protein -
12 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
13 Sobic.002G214900 polygalacturonase, putative, expressed -
14 Sobic.004G262300 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
15 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
16 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
17 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
18 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
19 Sobic.010G038700 expressed protein -
20 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1


Gene co-expression network
sample Sobic003G217100 Sobic003G217100 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic003G217100--Sobic008G132800 Sobic006G222400 Sobic006G222400 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic001G237500 Sobic001G237500 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic001G105100--Sobic001G067900 Sobic001G105100--Sobic003G217100 Sobic001G105100--Sobic008G132800 Sobic006G257001 Sobic006G257001 Sobic001G105100--Sobic006G257001 Sobic006G034800 Sobic006G034800 Sobic001G105100--Sobic006G034800 Sobic010G105600 Sobic010G105600 Sobic001G105100--Sobic010G105600 Sobic001G105100--Sobic001G237500 Sobic001G105100--Sobic006G222400 Sobic008G137600 Sobic008G137600 Sobic001G105100--Sobic008G137600 Sobic003G116600 Sobic003G116600 Sobic002G090700--Sobic003G116600 Sobic010G007400 Sobic010G007400 Sobic002G090700--Sobic010G007400 Sobic002G090700--Sobic003G217100 Sobic004G159000 Sobic004G159000 Sobic002G090700--Sobic004G159000 Sobic003G152900 Sobic003G152900 Sobic002G090700--Sobic003G152900 Sobic004G066800 Sobic004G066800 Sobic002G090700--Sobic004G066800 Sobic002G090700--Sobic001G309500 Sobic002G078400 Sobic002G078400 Sobic002G090700--Sobic002G078400 Sobic001G031900 Sobic001G031900 Sobic002G090700--Sobic001G031900 Sobic010G029400 Sobic010G029400 Sobic008G132800--Sobic010G029400 Sobic008G132800--Sobic002G078400 Sobic009G016201 Sobic009G016201 Sobic008G132800--Sobic009G016201 Sobic001G331900 Sobic001G331900 Sobic008G132800--Sobic001G331900 Sobic008G132800--Sobic004G066800 Sobic008G132800--Sobic001G105100 Sobic005G157200 Sobic005G157200 Sobic008G132800--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G132800--Sobic010G065400 Sobic008G132800--Sobic003G217100 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic006G222400--Sobic003G217100 Sobic006G222400--Sobic008G132800 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic010G017000 Sobic010G017000 Sobic006G222400--Sobic010G017000 Sobic004G196300 Sobic004G196300 Sobic001G309500--Sobic004G196300 Sobic010G153100 Sobic010G153100 Sobic001G309500--Sobic010G153100 Sobic001G309500--Sobic002G078400 Sobic001G309500--Sobic003G217100 Sobic001G526100 Sobic001G526100 Sobic001G309500--Sobic001G526100 Sobic001G309500--Sobic002G090700 Sobic001G309500--Sobic008G132800 Sobic001G309500--Sobic004G066800 Sobic003G155400 Sobic003G155400 Sobic001G309500--Sobic003G155400 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic001G067900--Sobic003G217100 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G067900--Sobic001G237500 Sobic001G112400 Sobic001G112400 Sobic005G184200--Sobic001G112400 Sobic005G184200--Sobic003G116600 Sobic001G443200 Sobic001G443200 Sobic005G184200--Sobic001G443200 Sobic005G184200--Sobic003G217100 Sobic001G332300 Sobic001G332300 Sobic005G184200--Sobic001G332300 Sobic004G344800 Sobic004G344800 Sobic005G184200--Sobic004G344800 Sobic005G184200--Sobic002G090700 Sobic001G378200 Sobic001G378200 Sobic005G184200--Sobic001G378200 Sobic008G110500 Sobic008G110500 Sobic005G184200--Sobic008G110500 Sobic001G237500--Sobic010G105600 Sobic001G237500--Sobic006G257001 Sobic001G237500--Sobic001G105100 Sobic001G237500--Sobic001G067900 Sobic001G237500--Sobic003G217100 Sobic004G222600 Sobic004G222600 Sobic001G237500--Sobic004G222600 Sobic002G131900 Sobic002G131900 Sobic001G237500--Sobic002G131900 Sobic003G052400 Sobic003G052400 Sobic001G237500--Sobic003G052400 Sobic004G132300 Sobic004G132300 Sobic001G237500--Sobic004G132300 Sobic001G408100--Sobic003G217100 Sobic001G408100--Sobic003G052400 Sobic009G171100 Sobic009G171100 Sobic001G408100--Sobic009G171100 Sobic001G408100--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic001G408100--Sobic003G043400 Sobic001G408100--Sobic006G222400 Sobic001G214200 Sobic001G214200 Sobic001G408100--Sobic001G214200 Sobic004G025300 Sobic004G025300 Sobic001G408100--Sobic004G025300 Sobic003G038600 Sobic003G038600 Sobic001G408100--Sobic003G038600
Octagon: transcription factors


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