Gene annotation
Transcriptome id Sobic.003G023500.1,Sobic.003G023500.2
Synonym ATSYP43, SYP43, Sb03g002230
Functional annotation syntaxin, putative, expressed
UniProt C5XL52
Pfam PF05739
Panther DB PTHR19957 PTHR19957:SF108
NCBI CDD KOG0809; SNARE protein TLG2/Syntaxin 16
KEGG Orthology K08489; syntaxin 16
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G05710 : syntaxin of plants 43
RAP-DB (Rice) LOC_Os06g02570.1 : syntaxin, putative, expressed
MaizeGDB (Corn) Zm00025a017591 , Zm00025a022950
Brachypodium KQK19812
Barley HORVU7Hr1G008670.8 , HORVU7Hr1G008670.9 , HORVU7Hr1G008670.6 , HORVU7Hr1G008670.7 , HORVU7Hr1G008670.4 , HORVU7Hr1G008670.5 , HORVU7Hr1G008670.2 , HORVU7Hr1G008670.3 , HORVU7Hr1G008670.1 , HORVU7Hr1G008640.2 , HORVU7Hr1G008670.10 , HORVU7Hr1G008670.11 , HORVU7Hr1G008670.12
Wheat TraesCS4A02G435000 , TraesCS7A02G049200 , TraesCS7D02G044300
Populus -


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cDNA sequences
Sobic.003G023500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G222600 expressed protein -
2 Sobic.003G217100 Yip1 domain containing protein, expressed -
3 Sobic.002G214900 polygalacturonase, putative, expressed -
4 Sobic.001G214200 lysM domain containing protein, putative, expressed -
5 Sobic.001G409900 transporter, putative, expressed -
6 Sobic.009G191600 tesmin/TSO1-like CXC domain containing protein, expressed -
7 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
8 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
9 Sobic.002G376500 OsCML8 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
10 Sobic.004G123000 expressed protein -
11 Sobic.007G150000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
13 Sobic.001G089500 RNA recognition motif containing protein, putative, expressed -
14 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
15 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
16 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
17 Sobic.002G043300 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
18 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
19 Sobic.001G309500 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
20 Sobic.001G013200 actin-related protein 2/3 complex subunit 4, putative, expressed K05755: actin related protein 2/3 complex, subunit 4


Gene co-expression network
sample Sobic003G023500 Sobic003G023500 Sobic004G222600 Sobic004G222600 Sobic003G023500--Sobic004G222600 Sobic003G217100 Sobic003G217100 Sobic003G023500--Sobic003G217100 Sobic002G214900 Sobic002G214900 Sobic003G023500--Sobic002G214900 Sobic001G214200 Sobic001G214200 Sobic003G023500--Sobic001G214200 Sobic001G409900 Sobic001G409900 Sobic003G023500--Sobic001G409900 Sobic009G191600 Sobic009G191600 Sobic003G023500--Sobic009G191600 Sobic006G222400 Sobic006G222400 Sobic003G023500--Sobic006G222400 Sobic004G054300 Sobic004G054300 Sobic003G023500--Sobic004G054300 Sobic002G376500 Sobic002G376500 Sobic003G023500--Sobic002G376500 Sobic007G150000 Sobic007G150000 Sobic004G222600--Sobic007G150000 Sobic004G222600--Sobic003G023500 Sobic004G222600--Sobic003G217100 Sobic001G237500 Sobic001G237500 Sobic004G222600--Sobic001G237500 Sobic001G309500 Sobic001G309500 Sobic004G222600--Sobic001G309500 Sobic002G296300 Sobic002G296300 Sobic004G222600--Sobic002G296300 Sobic002G090700 Sobic002G090700 Sobic004G222600--Sobic002G090700 Sobic003G332401 Sobic003G332401 Sobic004G222600--Sobic003G332401 Sobic007G115100 Sobic007G115100 Sobic004G222600--Sobic007G115100 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic003G217100--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic007G114200 Sobic007G114200 Sobic002G214900--Sobic007G114200 Sobic006G182100 Sobic006G182100 Sobic002G214900--Sobic006G182100 Sobic002G214900--Sobic001G409900 Sobic003G368500 Sobic003G368500 Sobic002G214900--Sobic003G368500 Sobic002G214900--Sobic007G115100 Sobic001G403700 Sobic001G403700 Sobic002G214900--Sobic001G403700 Sobic001G224400 Sobic001G224400 Sobic002G214900--Sobic001G224400 Sobic007G195701 Sobic007G195701 Sobic002G214900--Sobic007G195701 Sobic003G362400 Sobic003G362400 Sobic002G214900--Sobic003G362400 Sobic010G026700 Sobic010G026700 Sobic001G214200--Sobic010G026700 Sobic001G122500 Sobic001G122500 Sobic001G214200--Sobic001G122500 Sobic001G050400 Sobic001G050400 Sobic001G214200--Sobic001G050400 Sobic001G214200--Sobic003G023500 Sobic002G395600 Sobic002G395600 Sobic001G214200--Sobic002G395600 Sobic001G214200--Sobic001G408100 Sobic010G017000 Sobic010G017000 Sobic001G214200--Sobic010G017000 Sobic001G214200--Sobic002G214900 Sobic010G235200 Sobic010G235200 Sobic001G214200--Sobic010G235200 Sobic001G409900--Sobic002G214900 Sobic006G263100 Sobic006G263100 Sobic001G409900--Sobic006G263100 Sobic001G173300 Sobic001G173300 Sobic001G409900--Sobic001G173300 Sobic004G278000 Sobic004G278000 Sobic001G409900--Sobic004G278000 Sobic009G208800 Sobic009G208800 Sobic001G409900--Sobic009G208800 Sobic002G362900 Sobic002G362900 Sobic001G409900--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic001G409900--Sobic007G188100 Sobic001G409900--Sobic001G122500 Sobic001G409900--Sobic003G023500 Sobic001G066700 Sobic001G066700 Sobic009G191600--Sobic001G066700 Sobic009G191600--Sobic003G362400 Sobic006G062800 Sobic006G062800 Sobic009G191600--Sobic006G062800 Sobic001G041100 Sobic001G041100 Sobic009G191600--Sobic001G041100 Sobic003G358300 Sobic003G358300 Sobic009G191600--Sobic003G358300 Sobic010G213400 Sobic010G213400 Sobic009G191600--Sobic010G213400 Sobic009G191600--Sobic003G023500 Sobic009G191600--Sobic002G376500 Sobic009G191600--Sobic001G224400 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic006G222400--Sobic003G217100 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic006G222400--Sobic010G017000 Sobic006G217700 Sobic006G217700 Sobic004G054300--Sobic006G217700 Sobic006G264300 Sobic006G264300 Sobic004G054300--Sobic006G264300 Sobic004G054300--Sobic003G023500 Sobic001G089500 Sobic001G089500 Sobic004G054300--Sobic001G089500 Sobic004G185900 Sobic004G185900 Sobic004G054300--Sobic004G185900 Sobic004G054300--Sobic002G296300 Sobic002G083266 Sobic002G083266 Sobic004G054300--Sobic002G083266 Sobic002G113800 Sobic002G113800 Sobic004G054300--Sobic002G113800 Sobic002G309400 Sobic002G309400 Sobic004G054300--Sobic002G309400 Sobic002G376500--Sobic003G362400 Sobic010G042800 Sobic010G042800 Sobic002G376500--Sobic010G042800 Sobic001G529000 Sobic001G529000 Sobic002G376500--Sobic001G529000 Sobic010G210000 Sobic010G210000 Sobic002G376500--Sobic010G210000 Sobic002G376500--Sobic001G309500 Sobic006G141500 Sobic006G141500 Sobic002G376500--Sobic006G141500 Sobic002G218000 Sobic002G218000 Sobic002G376500--Sobic002G218000 Sobic002G159500 Sobic002G159500 Sobic002G376500--Sobic002G159500 Sobic010G153100 Sobic010G153100 Sobic002G376500--Sobic010G153100
Octagon: transcription factors


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