Gene annotation
Transcriptome id Sobic.002G043300.2
Synonym ATSYP132, SYP132, Sb02g003700
Functional annotation syntaxin, putative, expressed
UniProt C5XAA1
Pfam PF05739 PF00804
Panther DB PTHR19957 PTHR19957:SF126
NCBI CDD KOG0810; SNARE protein Syntaxin 1 and related proteins
KEGG Orthology K08486; syntaxin 1B/2/3
Gene Ontology GO:0005515; protein binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT3G03800 : syntaxin of plants 131
RAP-DB (Rice) LOC_Os07g07000.1 : syntaxin, putative, expressed
MaizeGDB (Corn) Zm00025a045082 , Zm00025a016118
Brachypodium KQK20775
Barley HORVU2Hr1G057350.4 , HORVU2Hr1G057350.1 , HORVU2Hr1G057350.2 , HORVU2Hr1G057350.3 , HORVU6Hr1G095330.21 , HORVU6Hr1G095330.20 , HORVU6Hr1G095330.18 , HORVU6Hr1G095330.19 , HORVU6Hr1G095330.16 , HORVU6Hr1G095330.17 , HORVU6Hr1G095330.14 , HORVU6Hr1G095330.15 , HORVU6Hr1G095330.12 , HORVU6Hr1G095330.13 , HORVU6Hr1G095330.10 , HORVU6Hr1G095330.11 , HORVU6Hr1G095330.4 , HORVU6Hr1G095330.8 , HORVU6Hr1G095330.9 , HORVU6Hr1G095330.5 , HORVU6Hr1G095330.6 , HORVU6Hr1G095330.7 , HORVU6Hr1G095330.1 , HORVU6Hr1G095330.2 , HORVU6Hr1G095330.3
Wheat TraesCS2A02G246600 , TraesCS2B02G263700 , TraesCS2D02G248900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G043300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
2 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
3 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
4 Sobic.009G224600 SNARE domain containing protein, putative, expressed K08506: syntaxin of plants SYP7
5 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
6 Sobic.001G421700 oxysterol-binding protein, putative, expressed -
7 Sobic.003G290000 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
8 Sobic.009G182300 - -
9 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
10 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
11 Sobic.002G376500 OsCML8 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
12 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
13 Sobic.001G418000 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
14 Sobic.001G416600 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
15 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
16 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.001G433700 chorismate synthase 2, chloroplast precursor, putative, expressed K01736: chorismate synthase
18 Sobic.004G222600 expressed protein -
19 Sobic.004G013300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.009G164500 clathrin adaptor complex small chain domain containing protein, expressed -


Gene co-expression network
sample Sobic002G043300 Sobic002G043300 Sobic003G023500 Sobic003G023500 Sobic002G043300--Sobic003G023500 Sobic001G007600 Sobic001G007600 Sobic002G043300--Sobic001G007600 Sobic010G210000 Sobic010G210000 Sobic002G043300--Sobic010G210000 Sobic009G224600 Sobic009G224600 Sobic002G043300--Sobic009G224600 Sobic003G319000 Sobic003G319000 Sobic002G043300--Sobic003G319000 Sobic001G421700 Sobic001G421700 Sobic002G043300--Sobic001G421700 Sobic003G290000 Sobic003G290000 Sobic002G043300--Sobic003G290000 Sobic009G182300 Sobic009G182300 Sobic002G043300--Sobic009G182300 Sobic001G382200 Sobic001G382200 Sobic002G043300--Sobic001G382200 Sobic004G222600 Sobic004G222600 Sobic003G023500--Sobic004G222600 Sobic003G217100 Sobic003G217100 Sobic003G023500--Sobic003G217100 Sobic002G214900 Sobic002G214900 Sobic003G023500--Sobic002G214900 Sobic001G214200 Sobic001G214200 Sobic003G023500--Sobic001G214200 Sobic001G409900 Sobic001G409900 Sobic003G023500--Sobic001G409900 Sobic009G191600 Sobic009G191600 Sobic003G023500--Sobic009G191600 Sobic006G222400 Sobic006G222400 Sobic003G023500--Sobic006G222400 Sobic004G054300 Sobic004G054300 Sobic003G023500--Sobic004G054300 Sobic002G376500 Sobic002G376500 Sobic003G023500--Sobic002G376500 Sobic004G138800 Sobic004G138800 Sobic001G007600--Sobic004G138800 Sobic009G067000 Sobic009G067000 Sobic001G007600--Sobic009G067000 Sobic001G418900 Sobic001G418900 Sobic001G007600--Sobic001G418900 Sobic003G443300 Sobic003G443300 Sobic001G007600--Sobic003G443300 Sobic001G505500 Sobic001G505500 Sobic001G007600--Sobic001G505500 Sobic003G368500 Sobic003G368500 Sobic001G007600--Sobic003G368500 Sobic006G252200 Sobic006G252200 Sobic001G007600--Sobic006G252200 Sobic001G007600--Sobic009G182300 Sobic007G076300 Sobic007G076300 Sobic001G007600--Sobic007G076300 Sobic003G018600 Sobic003G018600 Sobic010G210000--Sobic003G018600 Sobic010G210000--Sobic002G376500 Sobic006G115000 Sobic006G115000 Sobic010G210000--Sobic006G115000 Sobic003G362400 Sobic003G362400 Sobic010G210000--Sobic003G362400 Sobic009G012700 Sobic009G012700 Sobic010G210000--Sobic009G012700 Sobic009G050200 Sobic009G050200 Sobic010G210000--Sobic009G050200 Sobic003G073900 Sobic003G073900 Sobic010G210000--Sobic003G073900 Sobic001G018800 Sobic001G018800 Sobic010G210000--Sobic001G018800 Sobic004G062400 Sobic004G062400 Sobic010G210000--Sobic004G062400 Sobic010G144900 Sobic010G144900 Sobic009G224600--Sobic010G144900 Sobic003G084300 Sobic003G084300 Sobic009G224600--Sobic003G084300 Sobic010G217100 Sobic010G217100 Sobic009G224600--Sobic010G217100 Sobic009G189200 Sobic009G189200 Sobic009G224600--Sobic009G189200 Sobic001G412500 Sobic001G412500 Sobic009G224600--Sobic001G412500 Sobic009G124200 Sobic009G124200 Sobic009G224600--Sobic009G124200 Sobic006G094100 Sobic006G094100 Sobic009G224600--Sobic006G094100 Sobic009G165500 Sobic009G165500 Sobic009G224600--Sobic009G165500 Sobic001G418000 Sobic001G418000 Sobic009G224600--Sobic001G418000 Sobic001G196100 Sobic001G196100 Sobic003G319000--Sobic001G196100 Sobic003G092700 Sobic003G092700 Sobic003G319000--Sobic003G092700 Sobic009G182200 Sobic009G182200 Sobic003G319000--Sobic009G182200 Sobic001G026600 Sobic001G026600 Sobic003G319000--Sobic001G026600 Sobic003G252900 Sobic003G252900 Sobic003G319000--Sobic003G252900 Sobic003G312400 Sobic003G312400 Sobic003G319000--Sobic003G312400 Sobic003G319000--Sobic001G418000 Sobic003G410400 Sobic003G410400 Sobic003G319000--Sobic003G410400 Sobic003G319000--Sobic003G023500 Sobic004G339200 Sobic004G339200 Sobic001G421700--Sobic004G339200 Sobic007G168600 Sobic007G168600 Sobic001G421700--Sobic007G168600 Sobic008G132800 Sobic008G132800 Sobic001G421700--Sobic008G132800 Sobic002G078400 Sobic002G078400 Sobic001G421700--Sobic002G078400 Sobic001G403700 Sobic001G403700 Sobic001G421700--Sobic001G403700 Sobic003G104700 Sobic003G104700 Sobic001G421700--Sobic003G104700 Sobic010G008100 Sobic010G008100 Sobic001G421700--Sobic010G008100 Sobic002G296300 Sobic002G296300 Sobic001G421700--Sobic002G296300 Sobic007G059900 Sobic007G059900 Sobic001G421700--Sobic007G059900 Sobic003G219800 Sobic003G219800 Sobic003G290000--Sobic003G219800 Sobic007G186100 Sobic007G186100 Sobic003G290000--Sobic007G186100 Sobic002G320800 Sobic002G320800 Sobic003G290000--Sobic002G320800 Sobic003G290000--Sobic003G443300 Sobic006G216600 Sobic006G216600 Sobic003G290000--Sobic006G216600 Sobic006G156000 Sobic006G156000 Sobic003G290000--Sobic006G156000 Sobic003G290000--Sobic010G144900 Sobic009G212400 Sobic009G212400 Sobic003G290000--Sobic009G212400 Sobic003G290000--Sobic001G007600 Sobic009G182300--Sobic001G007600 Sobic009G182300--Sobic004G138800 Sobic009G182300--Sobic001G505500 Sobic009G182300--Sobic001G418900 Sobic009G182300--Sobic003G443300 Sobic005G017300 Sobic005G017300 Sobic009G182300--Sobic005G017300 Sobic009G182300--Sobic010G210000 Sobic004G344500 Sobic004G344500 Sobic009G182300--Sobic004G344500 Sobic003G127700 Sobic003G127700 Sobic009G182300--Sobic003G127700 Sobic009G258500 Sobic009G258500 Sobic001G382200--Sobic009G258500 Sobic009G201800 Sobic009G201800 Sobic001G382200--Sobic009G201800 Sobic003G118400 Sobic003G118400 Sobic001G382200--Sobic003G118400 Sobic002G341800 Sobic002G341800 Sobic001G382200--Sobic002G341800 Sobic009G234400 Sobic009G234400 Sobic001G382200--Sobic009G234400 Sobic002G394600 Sobic002G394600 Sobic001G382200--Sobic002G394600 Sobic008G016100 Sobic008G016100 Sobic001G382200--Sobic008G016100 Sobic004G010700 Sobic004G010700 Sobic001G382200--Sobic004G010700 Sobic001G530800 Sobic001G530800 Sobic001G382200--Sobic001G530800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.