Gene annotation
Transcriptome id Sobic.001G416600.1
Synonym ATRHM1, Sb01g039220, RHM1, ROL1
Functional annotation NAD dependent epimerase/dehydratase family domain containing protein, expressed
UniProt C5WPC1
Pfam PF01073 PF04321
Panther DB PTHR10366 PTHR10366:SF385
NCBI CDD -
KEGG Orthology K12450; UDP-glucose 4,6-dehydratase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT1G78570 : rhamnose biosynthesis 1
RAP-DB (Rice) LOC_Os03g17000.3 : NAD dependent epimerase/dehydratase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001874 , Zm00025a052743
Brachypodium -
Barley HORVU4Hr1G059120.3 , HORVU4Hr1G059120.2 , HORVU4Hr1G059120.1 , HORVU4Hr1G059120.5 , HORVU4Hr1G059120.4
Wheat TraesCS4B02G205100 , TraesCS4B02G205100 , TraesCS4B02G205100 , TraesCS4D02G206000 , TraesCS4A02G099200
Populus PNT12735 , PNT12734


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cDNA sequences
Sobic.001G416600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
2 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
3 Sobic.001G409900 transporter, putative, expressed -
4 Sobic.002G362900 IBS1, putative, expressed -
5 Sobic.003G392200 CXE carboxylesterase, putative, expressed -
6 Sobic.002G243200 similar to Heat shock protein 81-2(PubMedID : 29862293)@-(PubMedID : 29751546)@-(PubMedID : 29751546)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
7 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
8 Sobic.001G442900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
10 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
11 Sobic.002G214900 polygalacturonase, putative, expressed -
12 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
13 Sobic.003G052400 proline-rich family protein, putative, expressed -
14 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -
15 Sobic.006G257001 - -
16 Sobic.001G358300 SNARE associated Golgi protein, putative, expressed -
17 Sobic.004G259500 expressed protein -
18 Sobic.009G195900 OsFBT9 - F-box and tubby domain containing protein, expressed -
19 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
20 Sobic.009G171100 prenylated rab acceptor, putative, expressed -


Gene co-expression network
sample Sobic001G416600 Sobic001G416600 Sobic007G178200 Sobic007G178200 Sobic001G416600--Sobic007G178200 Sobic008G016900 Sobic008G016900 Sobic001G416600--Sobic008G016900 Sobic001G409900 Sobic001G409900 Sobic001G416600--Sobic001G409900 Sobic002G362900 Sobic002G362900 Sobic001G416600--Sobic002G362900 Sobic003G392200 Sobic003G392200 Sobic001G416600--Sobic003G392200 Sobic002G243200 Sobic002G243200 Sobic001G416600--Sobic002G243200 Sobic007G188100 Sobic007G188100 Sobic001G416600--Sobic007G188100 Sobic001G442900 Sobic001G442900 Sobic001G416600--Sobic001G442900 Sobic009G104000 Sobic009G104000 Sobic001G416600--Sobic009G104000 Sobic007G178200--Sobic003G392200 Sobic007G178200--Sobic001G416600 Sobic004G025000 Sobic004G025000 Sobic007G178200--Sobic004G025000 Sobic007G178200--Sobic008G016900 Sobic003G361300 Sobic003G361300 Sobic007G178200--Sobic003G361300 Sobic009G134600 Sobic009G134600 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic002G330300 Sobic002G330300 Sobic007G178200--Sobic002G330300 Sobic010G071700 Sobic010G071700 Sobic007G178200--Sobic010G071700 Sobic008G016900--Sobic002G330300 Sobic002G379400 Sobic002G379400 Sobic008G016900--Sobic002G379400 Sobic010G062800 Sobic010G062800 Sobic008G016900--Sobic010G062800 Sobic001G283500 Sobic001G283500 Sobic008G016900--Sobic001G283500 Sobic008G016900--Sobic007G188100 Sobic004G145200 Sobic004G145200 Sobic008G016900--Sobic004G145200 Sobic001G162100 Sobic001G162100 Sobic008G016900--Sobic001G162100 Sobic009G059700 Sobic009G059700 Sobic008G016900--Sobic009G059700 Sobic002G343500 Sobic002G343500 Sobic008G016900--Sobic002G343500 Sobic002G214900 Sobic002G214900 Sobic001G409900--Sobic002G214900 Sobic006G263100 Sobic006G263100 Sobic001G409900--Sobic006G263100 Sobic001G173300 Sobic001G173300 Sobic001G409900--Sobic001G173300 Sobic004G278000 Sobic004G278000 Sobic001G409900--Sobic004G278000 Sobic009G208800 Sobic009G208800 Sobic001G409900--Sobic009G208800 Sobic001G409900--Sobic002G362900 Sobic001G409900--Sobic007G188100 Sobic001G122500 Sobic001G122500 Sobic001G409900--Sobic001G122500 Sobic003G023500 Sobic003G023500 Sobic001G409900--Sobic003G023500 Sobic002G362900--Sobic007G188100 Sobic006G087900 Sobic006G087900 Sobic002G362900--Sobic006G087900 Sobic009G220200 Sobic009G220200 Sobic002G362900--Sobic009G220200 Sobic002G362900--Sobic009G208800 Sobic002G362900--Sobic004G145200 Sobic005G231700 Sobic005G231700 Sobic002G362900--Sobic005G231700 Sobic002G362900--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G362900--Sobic010G228000 Sobic002G362900--Sobic001G409900 Sobic003G392200--Sobic007G178200 Sobic003G392200--Sobic007G188100 Sobic001G525400 Sobic001G525400 Sobic003G392200--Sobic001G525400 Sobic002G270700 Sobic002G270700 Sobic003G392200--Sobic002G270700 Sobic002G197600 Sobic002G197600 Sobic003G392200--Sobic002G197600 Sobic009G171100 Sobic009G171100 Sobic003G392200--Sobic009G171100 Sobic001G081600 Sobic001G081600 Sobic003G392200--Sobic001G081600 Sobic002G395600 Sobic002G395600 Sobic003G392200--Sobic002G395600 Sobic001G063600 Sobic001G063600 Sobic003G392200--Sobic001G063600 Sobic009G182700 Sobic009G182700 Sobic002G243200--Sobic009G182700 Sobic009G234400 Sobic009G234400 Sobic002G243200--Sobic009G234400 Sobic009G219400 Sobic009G219400 Sobic002G243200--Sobic009G219400 Sobic002G243200--Sobic001G416600 Sobic004G039400 Sobic004G039400 Sobic002G243200--Sobic004G039400 Sobic001G214200 Sobic001G214200 Sobic002G243200--Sobic001G214200 Sobic002G087000 Sobic002G087000 Sobic002G243200--Sobic002G087000 Sobic001G112400 Sobic001G112400 Sobic002G243200--Sobic001G112400 Sobic001G050700 Sobic001G050700 Sobic002G243200--Sobic001G050700 Sobic007G188100--Sobic010G228000 Sobic007G188100--Sobic002G362900 Sobic002G353400 Sobic002G353400 Sobic007G188100--Sobic002G353400 Sobic002G374100 Sobic002G374100 Sobic007G188100--Sobic002G374100 Sobic004G259500 Sobic004G259500 Sobic007G188100--Sobic004G259500 Sobic007G188100--Sobic008G016900 Sobic007G188100--Sobic002G330300 Sobic007G188100--Sobic010G062800 Sobic002G118600 Sobic002G118600 Sobic007G188100--Sobic002G118600 Sobic004G321000 Sobic004G321000 Sobic001G442900--Sobic004G321000 Sobic004G278200 Sobic004G278200 Sobic001G442900--Sobic004G278200 Sobic001G442900--Sobic001G416600 Sobic003G032900 Sobic003G032900 Sobic001G442900--Sobic003G032900 Sobic009G231400 Sobic009G231400 Sobic001G442900--Sobic009G231400 Sobic001G243000 Sobic001G243000 Sobic001G442900--Sobic001G243000 Sobic009G163900 Sobic009G163900 Sobic001G442900--Sobic009G163900 Sobic003G373150 Sobic003G373150 Sobic001G442900--Sobic003G373150 Sobic003G144600 Sobic003G144600 Sobic001G442900--Sobic003G144600 Sobic001G404100 Sobic001G404100 Sobic009G104000--Sobic001G404100 Sobic010G008100 Sobic010G008100 Sobic009G104000--Sobic010G008100 Sobic010G038700 Sobic010G038700 Sobic009G104000--Sobic010G038700 Sobic001G440700 Sobic001G440700 Sobic009G104000--Sobic001G440700 Sobic001G502200 Sobic001G502200 Sobic009G104000--Sobic001G502200 Sobic007G132700 Sobic007G132700 Sobic009G104000--Sobic007G132700 Sobic001G067900 Sobic001G067900 Sobic009G104000--Sobic001G067900 Sobic009G104000--Sobic010G062800 Sobic009G179200 Sobic009G179200 Sobic009G104000--Sobic009G179200
Octagon: transcription factors


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