Gene annotation
Transcriptome id Sobic.002G362900.2,Sobic.002G362900.3,Sobic.002G362900.4,Sobic.002G362900.1,Sobic.002G362900.5,Sobic.002G362900.6
Synonym IBS1, Sb02g038280
Functional annotation IBS1, putative, expressed
UniProt A0A1W0W775 , A0A1W0W777 , C5XD78
Pfam PF00069 PF07714
Panther DB PTHR24056 PTHR24056:SF228
NCBI CDD KOG0659; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G18670 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os07g40550.1,LOC_Os07g40550.2 : IBS1, putative, expressed
MaizeGDB (Corn) Zm00025a048647 , Zm00025a015094
Brachypodium PNT74830 , KQK15425 , KQK15424 , KQK15426
Barley HORVU2Hr1G034440.3 , HORVU2Hr1G034440.2 , HORVU2Hr1G034440.1 , HORVU2Hr1G034440.4
Wheat TraesCS2D02G190600 , TraesCS2A02G182800 , TraesCS2B02G209300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
2 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
3 Sobic.009G220200 exostosin family domain containing protein, expressed -
4 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
5 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
6 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
7 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
8 Sobic.010G228000 Protein kinase domain containing protein, expressed -
9 Sobic.001G409900 transporter, putative, expressed -
10 Sobic.003G296700 protein kinase domain containing protein, expressed -
11 Sobic.003G294400 VQ domain containing protein, putative, expressed -
12 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
13 Sobic.006G191100 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
14 Sobic.001G416600 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
15 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
16 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
17 Sobic.003G392200 CXE carboxylesterase, putative, expressed -
18 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
19 Sobic.001G203200 E2F-related protein, putative, expressed -
20 Sobic.006G076201 - -


Gene co-expression network
sample Sobic002G362900 Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic002G362900--Sobic007G188100 Sobic006G087900 Sobic006G087900 Sobic002G362900--Sobic006G087900 Sobic009G220200 Sobic009G220200 Sobic002G362900--Sobic009G220200 Sobic009G208800 Sobic009G208800 Sobic002G362900--Sobic009G208800 Sobic004G145200 Sobic004G145200 Sobic002G362900--Sobic004G145200 Sobic005G231700 Sobic005G231700 Sobic002G362900--Sobic005G231700 Sobic008G016900 Sobic008G016900 Sobic002G362900--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G362900--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic002G362900--Sobic001G409900 Sobic007G188100--Sobic010G228000 Sobic007G188100--Sobic002G362900 Sobic002G353400 Sobic002G353400 Sobic007G188100--Sobic002G353400 Sobic002G374100 Sobic002G374100 Sobic007G188100--Sobic002G374100 Sobic004G259500 Sobic004G259500 Sobic007G188100--Sobic004G259500 Sobic007G188100--Sobic008G016900 Sobic002G330300 Sobic002G330300 Sobic007G188100--Sobic002G330300 Sobic010G062800 Sobic010G062800 Sobic007G188100--Sobic010G062800 Sobic002G118600 Sobic002G118600 Sobic007G188100--Sobic002G118600 Sobic006G087900--Sobic005G231700 Sobic006G087900--Sobic002G362900 Sobic003G296700 Sobic003G296700 Sobic006G087900--Sobic003G296700 Sobic001G063600 Sobic001G063600 Sobic006G087900--Sobic001G063600 Sobic006G076201 Sobic006G076201 Sobic006G087900--Sobic006G076201 Sobic010G080400 Sobic010G080400 Sobic006G087900--Sobic010G080400 Sobic002G325900 Sobic002G325900 Sobic006G087900--Sobic002G325900 Sobic001G051800 Sobic001G051800 Sobic006G087900--Sobic001G051800 Sobic006G087900--Sobic009G220200 Sobic009G220200--Sobic009G208800 Sobic009G220200--Sobic003G296700 Sobic009G220200--Sobic001G051800 Sobic001G516600 Sobic001G516600 Sobic009G220200--Sobic001G516600 Sobic001G173300 Sobic001G173300 Sobic009G220200--Sobic001G173300 Sobic004G257300 Sobic004G257300 Sobic009G220200--Sobic004G257300 Sobic009G220200--Sobic002G374100 Sobic009G220200--Sobic002G362900 Sobic009G220200--Sobic007G188100 Sobic009G208800--Sobic001G173300 Sobic009G208800--Sobic004G257300 Sobic009G208800--Sobic009G220200 Sobic009G208800--Sobic003G296700 Sobic009G208800--Sobic001G516600 Sobic007G057100 Sobic007G057100 Sobic009G208800--Sobic007G057100 Sobic002G294700 Sobic002G294700 Sobic009G208800--Sobic002G294700 Sobic009G208800--Sobic005G231700 Sobic008G177800 Sobic008G177800 Sobic009G208800--Sobic008G177800 Sobic004G145200--Sobic010G228000 Sobic004G145200--Sobic008G016900 Sobic004G145200--Sobic007G188100 Sobic004G145200--Sobic006G076201 Sobic004G145200--Sobic010G062800 Sobic004G145200--Sobic002G362900 Sobic001G012800 Sobic001G012800 Sobic004G145200--Sobic001G012800 Sobic002G242500 Sobic002G242500 Sobic004G145200--Sobic002G242500 Sobic004G145200--Sobic002G118600 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic005G231700--Sobic002G325900 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic005G231700--Sobic009G208800 Sobic008G159100 Sobic008G159100 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic008G016900--Sobic002G330300 Sobic002G379400 Sobic002G379400 Sobic008G016900--Sobic002G379400 Sobic008G016900--Sobic010G062800 Sobic001G283500 Sobic001G283500 Sobic008G016900--Sobic001G283500 Sobic008G016900--Sobic007G188100 Sobic008G016900--Sobic004G145200 Sobic001G162100 Sobic001G162100 Sobic008G016900--Sobic001G162100 Sobic009G059700 Sobic009G059700 Sobic008G016900--Sobic009G059700 Sobic002G343500 Sobic002G343500 Sobic008G016900--Sobic002G343500 Sobic010G228000--Sobic002G374100 Sobic010G228000--Sobic002G118600 Sobic010G228000--Sobic007G188100 Sobic010G228000--Sobic002G294700 Sobic010G228000--Sobic002G330300 Sobic004G280800 Sobic004G280800 Sobic010G228000--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic010G228000--Sobic010G246000 Sobic010G228000--Sobic002G379400 Sobic001G290400 Sobic001G290400 Sobic010G228000--Sobic001G290400 Sobic002G214900 Sobic002G214900 Sobic001G409900--Sobic002G214900 Sobic006G263100 Sobic006G263100 Sobic001G409900--Sobic006G263100 Sobic001G409900--Sobic001G173300 Sobic004G278000 Sobic004G278000 Sobic001G409900--Sobic004G278000 Sobic001G409900--Sobic009G208800 Sobic001G409900--Sobic002G362900 Sobic001G409900--Sobic007G188100 Sobic001G122500 Sobic001G122500 Sobic001G409900--Sobic001G122500 Sobic003G023500 Sobic003G023500 Sobic001G409900--Sobic003G023500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.