Gene annotation
Transcriptome id Sobic.003G294400.1
Synonym Sb03g034490
Functional annotation VQ domain containing protein, putative, expressed
UniProt C5XK25
Pfam PF05678
Panther DB PTHR33402 PTHR33402:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G28280 : VQ motif-containing protein
RAP-DB (Rice) LOC_Os01g54400.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a037961 , Zm00025a027568 , Zm00025a037109
Brachypodium KQK05352 , KQK09717 , KQK03202
Barley HORVU1Hr1G076390.1 , HORVU3Hr1G071320.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G259500 expressed protein -
2 Sobic.002G362900 IBS1, putative, expressed -
3 Sobic.005G211400 cytochrome P450, putative, expressed -
4 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
5 Sobic.001G012800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed -
6 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
7 Sobic.010G236500 LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.003G296700 protein kinase domain containing protein, expressed -
9 Sobic.009G220200 exostosin family domain containing protein, expressed -
10 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
11 Sobic.003G016600 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
13 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
14 Sobic.006G076201 - -
15 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
16 Sobic.006G100700 expressed protein -
17 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
18 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
19 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
20 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2


Gene co-expression network
sample Sobic003G294400 Sobic003G294400 Sobic004G259500 Sobic004G259500 Sobic003G294400--Sobic004G259500 Sobic002G362900 Sobic002G362900 Sobic003G294400--Sobic002G362900 Sobic005G211400 Sobic005G211400 Sobic003G294400--Sobic005G211400 Sobic004G145200 Sobic004G145200 Sobic003G294400--Sobic004G145200 Sobic001G012800 Sobic001G012800 Sobic003G294400--Sobic001G012800 Sobic007G188100 Sobic007G188100 Sobic003G294400--Sobic007G188100 Sobic010G236500 Sobic010G236500 Sobic003G294400--Sobic010G236500 Sobic003G296700 Sobic003G296700 Sobic003G294400--Sobic003G296700 Sobic009G220200 Sobic009G220200 Sobic003G294400--Sobic009G220200 Sobic004G259500--Sobic007G188100 Sobic009G171100 Sobic009G171100 Sobic004G259500--Sobic009G171100 Sobic002G353400 Sobic002G353400 Sobic004G259500--Sobic002G353400 Sobic003G425200 Sobic003G425200 Sobic004G259500--Sobic003G425200 Sobic004G259500--Sobic003G294400 Sobic001G525400 Sobic001G525400 Sobic004G259500--Sobic001G525400 Sobic002G379400 Sobic002G379400 Sobic004G259500--Sobic002G379400 Sobic008G016900 Sobic008G016900 Sobic004G259500--Sobic008G016900 Sobic004G278000 Sobic004G278000 Sobic004G259500--Sobic004G278000 Sobic002G362900--Sobic007G188100 Sobic006G087900 Sobic006G087900 Sobic002G362900--Sobic006G087900 Sobic002G362900--Sobic009G220200 Sobic009G208800 Sobic009G208800 Sobic002G362900--Sobic009G208800 Sobic002G362900--Sobic004G145200 Sobic005G231700 Sobic005G231700 Sobic002G362900--Sobic005G231700 Sobic002G362900--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G362900--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic002G362900--Sobic001G409900 Sobic009G241700 Sobic009G241700 Sobic005G211400--Sobic009G241700 Sobic007G098400 Sobic007G098400 Sobic005G211400--Sobic007G098400 Sobic002G242500 Sobic002G242500 Sobic005G211400--Sobic002G242500 Sobic005G211400--Sobic003G294400 Sobic004G232400 Sobic004G232400 Sobic005G211400--Sobic004G232400 Sobic005G211400--Sobic004G145200 Sobic006G076201 Sobic006G076201 Sobic005G211400--Sobic006G076201 Sobic001G090000 Sobic001G090000 Sobic005G211400--Sobic001G090000 Sobic001G403700 Sobic001G403700 Sobic005G211400--Sobic001G403700 Sobic004G145200--Sobic010G228000 Sobic004G145200--Sobic008G016900 Sobic004G145200--Sobic007G188100 Sobic004G145200--Sobic006G076201 Sobic010G062800 Sobic010G062800 Sobic004G145200--Sobic010G062800 Sobic004G145200--Sobic002G362900 Sobic004G145200--Sobic001G012800 Sobic004G145200--Sobic002G242500 Sobic002G118600 Sobic002G118600 Sobic004G145200--Sobic002G118600 Sobic001G012800--Sobic002G118600 Sobic001G012800--Sobic004G145200 Sobic001G012800--Sobic009G241700 Sobic001G012800--Sobic009G220200 Sobic001G012800--Sobic007G188100 Sobic001G012800--Sobic004G259500 Sobic001G012800--Sobic003G294400 Sobic001G012800--Sobic002G362900 Sobic007G006600 Sobic007G006600 Sobic001G012800--Sobic007G006600 Sobic007G188100--Sobic010G228000 Sobic007G188100--Sobic002G362900 Sobic007G188100--Sobic002G353400 Sobic002G374100 Sobic002G374100 Sobic007G188100--Sobic002G374100 Sobic007G188100--Sobic004G259500 Sobic007G188100--Sobic008G016900 Sobic002G330300 Sobic002G330300 Sobic007G188100--Sobic002G330300 Sobic007G188100--Sobic010G062800 Sobic007G188100--Sobic002G118600 Sobic010G236500--Sobic006G076201 Sobic010G236500--Sobic004G145200 Sobic003G095400 Sobic003G095400 Sobic010G236500--Sobic003G095400 Sobic010G236500--Sobic003G294400 Sobic010G236500--Sobic001G012800 Sobic006G064800 Sobic006G064800 Sobic010G236500--Sobic006G064800 Sobic010G236500--Sobic001G409900 Sobic010G236500--Sobic006G087900 Sobic010G236500--Sobic009G241700 Sobic001G516600 Sobic001G516600 Sobic003G296700--Sobic001G516600 Sobic003G296700--Sobic009G208800 Sobic003G296700--Sobic009G220200 Sobic001G341600 Sobic001G341600 Sobic003G296700--Sobic001G341600 Sobic009G217600 Sobic009G217600 Sobic003G296700--Sobic009G217600 Sobic010G076600 Sobic010G076600 Sobic003G296700--Sobic010G076600 Sobic006G095600 Sobic006G095600 Sobic003G296700--Sobic006G095600 Sobic003G296700--Sobic002G374100 Sobic002G294700 Sobic002G294700 Sobic003G296700--Sobic002G294700 Sobic009G220200--Sobic009G208800 Sobic009G220200--Sobic003G296700 Sobic001G051800 Sobic001G051800 Sobic009G220200--Sobic001G051800 Sobic009G220200--Sobic001G516600 Sobic001G173300 Sobic001G173300 Sobic009G220200--Sobic001G173300 Sobic004G257300 Sobic004G257300 Sobic009G220200--Sobic004G257300 Sobic009G220200--Sobic002G374100 Sobic009G220200--Sobic002G362900 Sobic009G220200--Sobic007G188100
Octagon: transcription factors


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