Gene annotation
Transcriptome id Sobic.010G236500.1
Synonym Sb10g027810
Functional annotation LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
UniProt A0A194YL19
Pfam PF14368
Panther DB PTHR33044 PTHR33044:SF37
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G62790 : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
RAP-DB (Rice) LOC_Os06g47200.1 : LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MaizeGDB (Corn) Zm00025a018181 , Zm00025a041847
Brachypodium KQK17238
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G236500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G076201 - -
2 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
3 Sobic.003G095400 glycosyltransferase protein, putative, expressed -
4 Sobic.003G294400 VQ domain containing protein, putative, expressed -
5 Sobic.001G012800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed -
6 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
7 Sobic.001G409900 transporter, putative, expressed -
8 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
9 Sobic.009G241700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
10 Sobic.009G220200 exostosin family domain containing protein, expressed -
11 Sobic.004G269700 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K04708: 3-dehydrosphinganine reductase
12 Sobic.001G051800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBDUF18 - F-box and DUF domain containing protein, expressed -
13 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
14 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
15 Sobic.002G362900 IBS1, putative, expressed -
16 Sobic.003G049300 expressed protein -
17 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
18 Sobic.002G020900 GCRP5 - Glycine and cysteine rich family protein precursor, expressed -
19 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
20 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1


Gene co-expression network
sample Sobic010G236500 Sobic010G236500 Sobic006G076201 Sobic006G076201 Sobic010G236500--Sobic006G076201 Sobic004G145200 Sobic004G145200 Sobic010G236500--Sobic004G145200 Sobic003G095400 Sobic003G095400 Sobic010G236500--Sobic003G095400 Sobic003G294400 Sobic003G294400 Sobic010G236500--Sobic003G294400 Sobic001G012800 Sobic001G012800 Sobic010G236500--Sobic001G012800 Sobic006G064800 Sobic006G064800 Sobic010G236500--Sobic006G064800 Sobic001G409900 Sobic001G409900 Sobic010G236500--Sobic001G409900 Sobic006G087900 Sobic006G087900 Sobic010G236500--Sobic006G087900 Sobic009G241700 Sobic009G241700 Sobic010G236500--Sobic009G241700 Sobic006G076201--Sobic006G087900 Sobic006G076201--Sobic004G145200 Sobic002G325900 Sobic002G325900 Sobic006G076201--Sobic002G325900 Sobic006G076201--Sobic010G236500 Sobic005G195600 Sobic005G195600 Sobic006G076201--Sobic005G195600 Sobic006G191100 Sobic006G191100 Sobic006G076201--Sobic006G191100 Sobic003G016600 Sobic003G016600 Sobic006G076201--Sobic003G016600 Sobic002G242500 Sobic002G242500 Sobic006G076201--Sobic002G242500 Sobic002G362900 Sobic002G362900 Sobic006G076201--Sobic002G362900 Sobic010G228000 Sobic010G228000 Sobic004G145200--Sobic010G228000 Sobic008G016900 Sobic008G016900 Sobic004G145200--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic004G145200--Sobic007G188100 Sobic004G145200--Sobic006G076201 Sobic010G062800 Sobic010G062800 Sobic004G145200--Sobic010G062800 Sobic004G145200--Sobic002G362900 Sobic004G145200--Sobic001G012800 Sobic004G145200--Sobic002G242500 Sobic002G118600 Sobic002G118600 Sobic004G145200--Sobic002G118600 Sobic004G172100 Sobic004G172100 Sobic003G095400--Sobic004G172100 Sobic004G078800 Sobic004G078800 Sobic003G095400--Sobic004G078800 Sobic003G095400--Sobic006G087900 Sobic010G069900 Sobic010G069900 Sobic003G095400--Sobic010G069900 Sobic003G095400--Sobic010G236500 Sobic006G242100 Sobic006G242100 Sobic003G095400--Sobic006G242100 Sobic001G294400 Sobic001G294400 Sobic003G095400--Sobic001G294400 Sobic003G095400--Sobic006G076201 Sobic009G102600 Sobic009G102600 Sobic003G095400--Sobic009G102600 Sobic004G259500 Sobic004G259500 Sobic003G294400--Sobic004G259500 Sobic003G294400--Sobic002G362900 Sobic005G211400 Sobic005G211400 Sobic003G294400--Sobic005G211400 Sobic003G294400--Sobic004G145200 Sobic003G294400--Sobic001G012800 Sobic003G294400--Sobic007G188100 Sobic003G294400--Sobic010G236500 Sobic003G296700 Sobic003G296700 Sobic003G294400--Sobic003G296700 Sobic009G220200 Sobic009G220200 Sobic003G294400--Sobic009G220200 Sobic001G012800--Sobic002G118600 Sobic001G012800--Sobic004G145200 Sobic001G012800--Sobic009G241700 Sobic001G012800--Sobic009G220200 Sobic001G012800--Sobic007G188100 Sobic001G012800--Sobic004G259500 Sobic001G012800--Sobic003G294400 Sobic001G012800--Sobic002G362900 Sobic007G006600 Sobic007G006600 Sobic001G012800--Sobic007G006600 Sobic006G064800--Sobic006G087900 Sobic006G064800--Sobic005G195600 Sobic003G374700 Sobic003G374700 Sobic006G064800--Sobic003G374700 Sobic006G064800--Sobic002G362900 Sobic010G161450 Sobic010G161450 Sobic006G064800--Sobic010G161450 Sobic006G064800--Sobic001G012800 Sobic001G051800 Sobic001G051800 Sobic006G064800--Sobic001G051800 Sobic006G064800--Sobic010G236500 Sobic009G073000 Sobic009G073000 Sobic006G064800--Sobic009G073000 Sobic002G214900 Sobic002G214900 Sobic001G409900--Sobic002G214900 Sobic006G263100 Sobic006G263100 Sobic001G409900--Sobic006G263100 Sobic001G173300 Sobic001G173300 Sobic001G409900--Sobic001G173300 Sobic004G278000 Sobic004G278000 Sobic001G409900--Sobic004G278000 Sobic009G208800 Sobic009G208800 Sobic001G409900--Sobic009G208800 Sobic001G409900--Sobic002G362900 Sobic001G409900--Sobic007G188100 Sobic001G122500 Sobic001G122500 Sobic001G409900--Sobic001G122500 Sobic003G023500 Sobic003G023500 Sobic001G409900--Sobic003G023500 Sobic005G231700 Sobic005G231700 Sobic006G087900--Sobic005G231700 Sobic006G087900--Sobic002G362900 Sobic006G087900--Sobic003G296700 Sobic001G063600 Sobic001G063600 Sobic006G087900--Sobic001G063600 Sobic006G087900--Sobic006G076201 Sobic010G080400 Sobic010G080400 Sobic006G087900--Sobic010G080400 Sobic006G087900--Sobic002G325900 Sobic006G087900--Sobic001G051800 Sobic006G087900--Sobic009G220200 Sobic010G107100 Sobic010G107100 Sobic009G241700--Sobic010G107100 Sobic009G241700--Sobic005G211400 Sobic004G058000 Sobic004G058000 Sobic009G241700--Sobic004G058000 Sobic004G158901 Sobic004G158901 Sobic009G241700--Sobic004G158901 Sobic007G098400 Sobic007G098400 Sobic009G241700--Sobic007G098400 Sobic001G403700 Sobic001G403700 Sobic009G241700--Sobic001G403700 Sobic001G399100 Sobic001G399100 Sobic009G241700--Sobic001G399100 Sobic009G241700--Sobic001G012800 Sobic009G111600 Sobic009G111600 Sobic009G241700--Sobic009G111600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.