Gene annotation
| Transcriptome id | Sobic.001G051800.1 |
|---|---|
| Synonym | Sb01g004760 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) OsFBDUF18 - F-box and DUF domain containing protein, expressed |
| UniProt | C5WX18 |
| Pfam | PF12734 |
| Panther DB | PTHR31568 PTHR31568:SF15 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os03g58764.1 : OsFBDUF18 - F-box and DUF domain containing protein, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | KQK10044 , KQK10045 , KQK12642 |
| Barley | HORVU3Hr1G076400.4 , HORVU3Hr1G076400.5 , HORVU3Hr1G076400.6 , HORVU3Hr1G076400.1 , HORVU3Hr1G076400.3 |
| Wheat | TraesCS3A02G318900 |
| Populus | - |
JBrowse
| Sobic.001G051800 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G220200 | exostosin family domain containing protein, expressed | - |
| 2 | Sobic.001G290400 | no apical meristem protein, putative, expressed | - |
| 3 | Sobic.003G338900 | expressed protein | - |
| 4 | Sobic.009G071800 | 6-phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 5 | Sobic.002G203000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 6 | Sobic.003G296700 | protein kinase domain containing protein, expressed | - |
| 7 | Sobic.009G208800 | hydrolase, acting on carbon-nitrogen, putative, expressed | - |
| 8 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 9 | Sobic.001G473900 | Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed | K09286: EREBP-like factor |
| 10 | Sobic.010G245800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 11 | Sobic.005G139700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed | K13447: respiratory burst oxidase |
| 12 | Sobic.010G246000 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 13 | Sobic.001G077700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 14 | Sobic.001G209800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 15 | Sobic.006G263100 | expressed protein | - |
| 16 | Sobic.005G231700 | ZOS7-01 - C2H2 zinc finger protein, expressed | - |
| 17 | Sobic.001G398500 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed | - |
| 18 | Sobic.009G030600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed | - |
| 19 | Sobic.010G076600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 20 | Sobic.001G113700 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
