Gene annotation
| Transcriptome id | Sobic.001G113700.1 |
|---|---|
| Synonym | Sb01g010100 |
| Functional annotation | cytochrome b561, putative, expressed |
| UniProt | C5WN08 |
| Pfam | PF03188 |
| Panther DB | PTHR10106 PTHR10106:SF19 |
| NCBI CDD | KOG1619; Cytochrome b |
| KEGG Orthology | K08360; cytochrome b-561 |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT1G14730 : Cytochrome b561/ferric reductase transmembrane protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os03g50820.1 : cytochrome b561, putative, expressed |
| MaizeGDB (Corn) | Zm00025a007886 |
| Brachypodium | - |
| Barley | HORVU4Hr1G008200.9 , HORVU4Hr1G008200.1 , HORVU4Hr1G008200.2 , HORVU4Hr1G008200.6 , HORVU4Hr1G008200.7 , HORVU4Hr1G008200.10 , HORVU4Hr1G008200.11 |
| Wheat | TraesCS4A02G264900 , TraesCS4D02G050300 , TraesCS4B02G049900 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G220200 | exostosin family domain containing protein, expressed | - |
| 2 | Sobic.001G217000 | DUF584 domain containing protein, putative, expressed | - |
| 3 | Sobic.001G051800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBDUF18 - F-box and DUF domain containing protein, expressed | - |
| 4 | Sobic.002G210300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed | - |
| 5 | Sobic.003G338900 | expressed protein | - |
| 6 | Sobic.009G208800 | hydrolase, acting on carbon-nitrogen, putative, expressed | - |
| 7 | Sobic.005G231700 | ZOS7-01 - C2H2 zinc finger protein, expressed | - |
| 8 | Sobic.002G379400 | CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K14498: serine/threonine-protein kinase SRK2 |
| 9 | Sobic.003G296700 | protein kinase domain containing protein, expressed | - |
| 10 | Sobic.006G087900 | TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed | - |
| 11 | Sobic.001G012800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed | - |
| 12 | Sobic.001G513700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed | - |
| 13 | Sobic.003G305601 | - | - |
| 14 | Sobic.001G516600 | AMP-binding domain containing protein, expressed | K10526: OPC-8:0 CoA ligase 1 |
| 15 | Sobic.001G532200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed | - |
| 16 | Sobic.001G084100 | UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed | K00012: UGDH, UDPglucose 6-dehydrogenase |
| 17 | Sobic.009G073300 | harpin-induced protein 1 domain containing protein, expressed | - |
| 18 | Sobic.003G373100 | patellin protein, putative, expressed | - |
| 19 | Sobic.004G268700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K09843: (+)-abscisic acid 8'-hydroxylase |
| 20 | Sobic.010G076600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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