Gene annotation
Transcriptome id Sobic.009G073300.1
Synonym Sb09g006180
Functional annotation harpin-induced protein 1 domain containing protein, expressed
UniProt C5YUE9
Pfam PF03168
Panther DB PTHR31234 PTHR31234:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17620 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os05g11010.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043161
Brachypodium KQK07106
Barley HORVU3Hr1G019070.2 , HORVU3Hr1G019070.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G073300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
2 Sobic.004G286600 Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed -
3 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
4 Sobic.001G437000 ACT domain containing protein, expressed -
5 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
6 Sobic.007G057100 expressed protein -
7 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
8 Sobic.006G194100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
9 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
10 Sobic.007G124301 - -
11 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
12 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
13 Sobic.006G194000 DUF581 domain containing protein, expressed -
14 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
15 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
16 Sobic.004G257300 GPI-anchored protein, putative, expressed -
17 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
18 Sobic.008G151300 expressed protein -
19 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
20 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -


Gene co-expression network
sample Sobic009G073300 Sobic009G073300 Sobic001G532200 Sobic001G532200 Sobic009G073300--Sobic001G532200 Sobic004G286600 Sobic004G286600 Sobic009G073300--Sobic004G286600 Sobic008G177800 Sobic008G177800 Sobic009G073300--Sobic008G177800 Sobic001G437000 Sobic001G437000 Sobic009G073300--Sobic001G437000 Sobic006G231100 Sobic006G231100 Sobic009G073300--Sobic006G231100 Sobic007G057100 Sobic007G057100 Sobic009G073300--Sobic007G057100 Sobic001G516600 Sobic001G516600 Sobic009G073300--Sobic001G516600 Sobic006G194100 Sobic006G194100 Sobic009G073300--Sobic006G194100 Sobic001G173300 Sobic001G173300 Sobic009G073300--Sobic001G173300 Sobic001G532200--Sobic001G516600 Sobic001G084100 Sobic001G084100 Sobic001G532200--Sobic001G084100 Sobic004G212300 Sobic004G212300 Sobic001G532200--Sobic004G212300 Sobic001G513700 Sobic001G513700 Sobic001G532200--Sobic001G513700 Sobic009G248500 Sobic009G248500 Sobic001G532200--Sobic009G248500 Sobic007G151100 Sobic007G151100 Sobic001G532200--Sobic007G151100 Sobic010G052200 Sobic010G052200 Sobic001G532200--Sobic010G052200 Sobic001G532200--Sobic009G073300 Sobic009G027900 Sobic009G027900 Sobic001G532200--Sobic009G027900 Sobic004G286600--Sobic008G177800 Sobic004G286600--Sobic006G231100 Sobic002G294700 Sobic002G294700 Sobic004G286600--Sobic002G294700 Sobic001G077700 Sobic001G077700 Sobic004G286600--Sobic001G077700 Sobic010G234600 Sobic010G234600 Sobic004G286600--Sobic010G234600 Sobic002G036100 Sobic002G036100 Sobic004G286600--Sobic002G036100 Sobic002G248100 Sobic002G248100 Sobic004G286600--Sobic002G248100 Sobic006G179500 Sobic006G179500 Sobic004G286600--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic004G286600--Sobic002G140300 Sobic008G177800--Sobic002G294700 Sobic008G177800--Sobic006G231100 Sobic008G177800--Sobic010G234600 Sobic008G177800--Sobic004G286600 Sobic002G415600 Sobic002G415600 Sobic008G177800--Sobic002G415600 Sobic010G217800 Sobic010G217800 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic006G230900 Sobic006G230900 Sobic008G177800--Sobic006G230900 Sobic008G177800--Sobic001G077700 Sobic006G165100 Sobic006G165100 Sobic001G437000--Sobic006G165100 Sobic001G437000--Sobic008G177800 Sobic006G194000 Sobic006G194000 Sobic001G437000--Sobic006G194000 Sobic001G437000--Sobic009G073300 Sobic001G437000--Sobic006G231100 Sobic001G437000--Sobic009G027900 Sobic001G338600 Sobic001G338600 Sobic001G437000--Sobic001G338600 Sobic002G282300 Sobic002G282300 Sobic001G437000--Sobic002G282300 Sobic002G278500 Sobic002G278500 Sobic001G437000--Sobic002G278500 Sobic006G231100--Sobic008G177800 Sobic006G231100--Sobic006G230900 Sobic006G231200 Sobic006G231200 Sobic006G231100--Sobic006G231200 Sobic006G231100--Sobic010G217800 Sobic006G231100--Sobic002G415600 Sobic006G231100--Sobic010G234600 Sobic006G231100--Sobic004G286600 Sobic006G231100--Sobic002G294700 Sobic006G231100--Sobic002G282300 Sobic001G489600 Sobic001G489600 Sobic007G057100--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic007G057100--Sobic002G203000 Sobic007G057100--Sobic001G513700 Sobic006G095600 Sobic006G095600 Sobic007G057100--Sobic006G095600 Sobic007G057100--Sobic004G286600 Sobic007G057100--Sobic001G077700 Sobic001G051600 Sobic001G051600 Sobic007G057100--Sobic001G051600 Sobic004G147900 Sobic004G147900 Sobic007G057100--Sobic004G147900 Sobic001G473900 Sobic001G473900 Sobic007G057100--Sobic001G473900 Sobic001G516600--Sobic001G173300 Sobic001G516600--Sobic007G151100 Sobic003G037800 Sobic003G037800 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic006G194100--Sobic006G231100 Sobic006G194100--Sobic008G177800 Sobic006G194100--Sobic004G286600 Sobic006G194100--Sobic006G230900 Sobic006G194100--Sobic007G057100 Sobic004G280900 Sobic004G280900 Sobic006G194100--Sobic004G280900 Sobic006G194100--Sobic002G294700 Sobic004G257300 Sobic004G257300 Sobic006G194100--Sobic004G257300 Sobic001G205350 Sobic001G205350 Sobic006G194100--Sobic001G205350 Sobic001G173300--Sobic001G516600 Sobic001G173300--Sobic004G257300 Sobic004G036600 Sobic004G036600 Sobic001G173300--Sobic004G036600 Sobic009G208800 Sobic009G208800 Sobic001G173300--Sobic009G208800 Sobic001G173300--Sobic001G084100 Sobic010G065900 Sobic010G065900 Sobic001G173300--Sobic010G065900 Sobic001G173300--Sobic007G151100 Sobic001G173300--Sobic009G027900 Sobic005G168100 Sobic005G168100 Sobic001G173300--Sobic005G168100
Octagon: transcription factors


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