Gene annotation
Transcriptome id Sobic.001G532200.1
Synonym Sb01g049520, RBL2, ATRBL2
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
OsRhmbd7 - Putative Rhomboid homologue, expressed
UniProt C5X111
Pfam PF01694
Panther DB PTHR22936 PTHR22936:SF21
NCBI CDD KOG2289; Rhomboid family proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G63120 : RHOMBOID-like 2
RAP-DB (Rice) LOC_Os03g02530.1 : OsRhmbd7 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a000227
Brachypodium KQK23992
Barley HORVU4Hr1G086150.10 , HORVU1Hr1G048610.14 , HORVU1Hr1G048610.10 , HORVU1Hr1G048610.11 , HORVU1Hr1G048610.12 , HORVU1Hr1G048610.13 , HORVU2Hr1G095170.2 , HORVU2Hr1G095170.3 , HORVU2Hr1G095170.6 , HORVU2Hr1G095170.7 , HORVU2Hr1G095170.4 , HORVU2Hr1G095170.5 , HORVU2Hr1G095170.8 , HORVU2Hr1G095170.9 , HORVU4Hr1G086150.8 , HORVU4Hr1G086150.9 , HORVU4Hr1G086150.3 , HORVU4Hr1G086150.6 , HORVU4Hr1G086150.7 , HORVU4Hr1G086150.4 , HORVU4Hr1G086150.5 , HORVU1Hr1G048610.6 , HORVU1Hr1G048610.7 , HORVU1Hr1G048610.4 , HORVU1Hr1G048610.5 , HORVU1Hr1G048610.2 , HORVU1Hr1G048610.3 , HORVU1Hr1G048610.1 , HORVU1Hr1G048610.8 , HORVU1Hr1G048610.9 , HORVU2Hr1G095170.10 , HORVU2Hr1G095170.11
Wheat TraesCS4D02G350300 , TraesCS4B02G356600 , TraesCS2D02G398500 , TraesCS5A02G526000 , TraesCS1D02G187500 , TraesCS4A02G179600 , TraesCS1B02G196600 , TraesCS2A02G401000 , TraesCS1A02G188900 , TraesCS2B02G419100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
2 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
3 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
4 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
5 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
6 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
7 Sobic.010G052200 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S-adenosyl methionine (SAM)-dependent O-methyltransferase(PubMedID : 30289910)@enzyme involved in monolignol synthesis(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase(PubMedID : 27457122)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
8 Sobic.009G073300 harpin-induced protein 1 domain containing protein, expressed -
9 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
10 Sobic.003G037800 transferase family protein, putative, expressed -
11 Sobic.003G119500 expressed protein -
12 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
13 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
14 Sobic.002G202600 joka8, putative, expressed -
15 Sobic.001G389700 VQ domain containing protein, putative, expressed -
16 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
17 Sobic.003G296700 protein kinase domain containing protein, expressed -
18 Sobic.010G064000 expressed protein -
19 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
20 Sobic.007G124301 - -


Gene co-expression network
sample Sobic001G532200 Sobic001G532200 Sobic001G516600 Sobic001G516600 Sobic001G532200--Sobic001G516600 Sobic001G084100 Sobic001G084100 Sobic001G532200--Sobic001G084100 Sobic004G212300 Sobic004G212300 Sobic001G532200--Sobic004G212300 Sobic001G513700 Sobic001G513700 Sobic001G532200--Sobic001G513700 Sobic009G248500 Sobic009G248500 Sobic001G532200--Sobic009G248500 Sobic007G151100 Sobic007G151100 Sobic001G532200--Sobic007G151100 Sobic010G052200 Sobic010G052200 Sobic001G532200--Sobic010G052200 Sobic009G073300 Sobic009G073300 Sobic001G532200--Sobic009G073300 Sobic009G027900 Sobic009G027900 Sobic001G532200--Sobic009G027900 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic001G516600--Sobic007G151100 Sobic003G037800 Sobic003G037800 Sobic001G516600--Sobic003G037800 Sobic003G296700 Sobic003G296700 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic001G084100--Sobic001G532200 Sobic001G084100--Sobic001G173300 Sobic006G156000 Sobic006G156000 Sobic001G084100--Sobic006G156000 Sobic001G084100--Sobic010G052200 Sobic005G168100 Sobic005G168100 Sobic001G084100--Sobic005G168100 Sobic001G084100--Sobic004G212300 Sobic003G119500 Sobic003G119500 Sobic001G084100--Sobic003G119500 Sobic003G219800 Sobic003G219800 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic004G212300--Sobic010G052200 Sobic004G212300--Sobic001G532200 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic004G212300--Sobic001G084100 Sobic004G212300--Sobic001G516600 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic001G513700--Sobic008G177800 Sobic001G513700--Sobic007G151100 Sobic002G036100 Sobic002G036100 Sobic001G513700--Sobic002G036100 Sobic001G513700--Sobic001G516600 Sobic001G513700--Sobic001G532200 Sobic006G231100 Sobic006G231100 Sobic001G513700--Sobic006G231100 Sobic002G294700 Sobic002G294700 Sobic001G513700--Sobic002G294700 Sobic007G057100 Sobic007G057100 Sobic001G513700--Sobic007G057100 Sobic006G089300 Sobic006G089300 Sobic001G513700--Sobic006G089300 Sobic001G322200 Sobic001G322200 Sobic009G248500--Sobic001G322200 Sobic001G267600 Sobic001G267600 Sobic009G248500--Sobic001G267600 Sobic009G248500--Sobic003G037800 Sobic009G248500--Sobic009G027900 Sobic002G356101 Sobic002G356101 Sobic009G248500--Sobic002G356101 Sobic001G247300 Sobic001G247300 Sobic009G248500--Sobic001G247300 Sobic003G228900 Sobic003G228900 Sobic009G248500--Sobic003G228900 Sobic006G066200 Sobic006G066200 Sobic009G248500--Sobic006G066200 Sobic003G093000 Sobic003G093000 Sobic009G248500--Sobic003G093000 Sobic007G151100--Sobic001G516600 Sobic003G158500 Sobic003G158500 Sobic007G151100--Sobic003G158500 Sobic007G151100--Sobic002G356101 Sobic001G538866 Sobic001G538866 Sobic007G151100--Sobic001G538866 Sobic005G028700 Sobic005G028700 Sobic007G151100--Sobic005G028700 Sobic002G140300 Sobic002G140300 Sobic007G151100--Sobic002G140300 Sobic007G151100--Sobic002G245100 Sobic007G151100--Sobic001G513700 Sobic007G151100--Sobic002G036100 Sobic010G052200--Sobic004G212300 Sobic010G052200--Sobic001G084100 Sobic010G052200--Sobic001G532200 Sobic002G128800 Sobic002G128800 Sobic010G052200--Sobic002G128800 Sobic007G124301 Sobic007G124301 Sobic010G052200--Sobic007G124301 Sobic010G252401 Sobic010G252401 Sobic010G052200--Sobic010G252401 Sobic010G052200--Sobic003G037800 Sobic005G113300 Sobic005G113300 Sobic010G052200--Sobic005G113300 Sobic010G052200--Sobic006G156000 Sobic009G073300--Sobic001G532200 Sobic004G286600 Sobic004G286600 Sobic009G073300--Sobic004G286600 Sobic009G073300--Sobic008G177800 Sobic001G437000 Sobic001G437000 Sobic009G073300--Sobic001G437000 Sobic009G073300--Sobic006G231100 Sobic009G073300--Sobic007G057100 Sobic009G073300--Sobic001G516600 Sobic006G194100 Sobic006G194100 Sobic009G073300--Sobic006G194100 Sobic009G073300--Sobic001G173300 Sobic009G027900--Sobic009G248500 Sobic009G027900--Sobic001G322200 Sobic009G027900--Sobic006G066200 Sobic008G042900 Sobic008G042900 Sobic009G027900--Sobic008G042900 Sobic009G027900--Sobic002G140300 Sobic009G027900--Sobic001G532200 Sobic001G464900 Sobic001G464900 Sobic009G027900--Sobic001G464900 Sobic006G165100 Sobic006G165100 Sobic009G027900--Sobic006G165100 Sobic009G027900--Sobic001G516600
Octagon: transcription factors


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