Gene annotation
Transcriptome id Sobic.001G389700.1
Synonym Sb01g036940
Functional annotation VQ domain containing protein, putative, expressed
UniProt C5X1T5
Pfam PF05678
Panther DB PTHR33179 PTHR33179:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41010 : calmodulin (CAM)-binding protein of 25 kDa
RAP-DB (Rice) LOC_Os03g20440.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002239 , Zm00025a022179 , Zm00025a052482
Brachypodium -
Barley HORVU4Hr1G052140.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
2 Sobic.003G119500 expressed protein -
3 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
4 Sobic.002G329000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-ld.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.002G250000 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed -
6 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
7 Sobic.005G093000 - -
8 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
9 Sobic.002G393400 chaperonin, putative, expressed K04078: groES, chaperonin GroES
10 Sobic.004G171700 U-box domain-containing protein, putative, expressed -
11 Sobic.010G064000 expressed protein -
12 Sobic.001G471200 membrane protein, putative, expressed -
13 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
14 Sobic.008G174650 - K08064: NFYA, nuclear transcription factor Y, alpha
15 Sobic.010G184800 heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
16 Sobic.002G234400 white-brown complex homolog protein 11, putative, expressed -
17 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
18 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
19 Sobic.004G234100 phosphoglycerate mutase, putative, expressed -
20 Sobic.003G037800 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G389700 Sobic001G389700 Sobic001G532200 Sobic001G532200 Sobic001G389700--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic001G389700--Sobic003G119500 Sobic004G212300 Sobic004G212300 Sobic001G389700--Sobic004G212300 Sobic002G329000 Sobic002G329000 Sobic001G389700--Sobic002G329000 Sobic002G250000 Sobic002G250000 Sobic001G389700--Sobic002G250000 Sobic010G252500 Sobic010G252500 Sobic001G389700--Sobic010G252500 Sobic005G093000 Sobic005G093000 Sobic001G389700--Sobic005G093000 Sobic001G084100 Sobic001G084100 Sobic001G389700--Sobic001G084100 Sobic002G393400 Sobic002G393400 Sobic001G389700--Sobic002G393400 Sobic001G516600 Sobic001G516600 Sobic001G532200--Sobic001G516600 Sobic001G532200--Sobic001G084100 Sobic001G532200--Sobic004G212300 Sobic001G513700 Sobic001G513700 Sobic001G532200--Sobic001G513700 Sobic009G248500 Sobic009G248500 Sobic001G532200--Sobic009G248500 Sobic007G151100 Sobic007G151100 Sobic001G532200--Sobic007G151100 Sobic010G052200 Sobic010G052200 Sobic001G532200--Sobic010G052200 Sobic009G073300 Sobic009G073300 Sobic001G532200--Sobic009G073300 Sobic009G027900 Sobic009G027900 Sobic001G532200--Sobic009G027900 Sobic010G212500 Sobic010G212500 Sobic003G119500--Sobic010G212500 Sobic003G311800 Sobic003G311800 Sobic003G119500--Sobic003G311800 Sobic002G003800 Sobic002G003800 Sobic003G119500--Sobic002G003800 Sobic009G109000 Sobic009G109000 Sobic003G119500--Sobic009G109000 Sobic001G049900 Sobic001G049900 Sobic003G119500--Sobic001G049900 Sobic006G274933 Sobic006G274933 Sobic003G119500--Sobic006G274933 Sobic004G348800 Sobic004G348800 Sobic003G119500--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic003G119500--Sobic004G297900 Sobic010G085800 Sobic010G085800 Sobic003G119500--Sobic010G085800 Sobic004G212300--Sobic010G052200 Sobic004G212300--Sobic001G532200 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic004G212300--Sobic001G084100 Sobic004G212300--Sobic001G516600 Sobic006G156000 Sobic006G156000 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic004G212300--Sobic010G252500 Sobic002G329000--Sobic005G093000 Sobic003G429000 Sobic003G429000 Sobic002G329000--Sobic003G429000 Sobic010G268400 Sobic010G268400 Sobic002G329000--Sobic010G268400 Sobic001G389000 Sobic001G389000 Sobic002G329000--Sobic001G389000 Sobic007G155000 Sobic007G155000 Sobic002G329000--Sobic007G155000 Sobic003G417350 Sobic003G417350 Sobic002G329000--Sobic003G417350 Sobic003G037800 Sobic003G037800 Sobic002G329000--Sobic003G037800 Sobic001G050100 Sobic001G050100 Sobic002G329000--Sobic001G050100 Sobic010G195500 Sobic010G195500 Sobic002G329000--Sobic010G195500 Sobic002G234400 Sobic002G234400 Sobic002G250000--Sobic002G234400 Sobic001G397300 Sobic001G397300 Sobic002G250000--Sobic001G397300 Sobic010G029700 Sobic010G029700 Sobic002G250000--Sobic010G029700 Sobic008G186100 Sobic008G186100 Sobic002G250000--Sobic008G186100 Sobic005G011300 Sobic005G011300 Sobic002G250000--Sobic005G011300 Sobic007G006300 Sobic007G006300 Sobic002G250000--Sobic007G006300 Sobic004G108200 Sobic004G108200 Sobic002G250000--Sobic004G108200 Sobic002G287100 Sobic002G287100 Sobic002G250000--Sobic002G287100 Sobic003G033900 Sobic003G033900 Sobic002G250000--Sobic003G033900 Sobic007G218800 Sobic007G218800 Sobic010G252500--Sobic007G218800 Sobic007G030501 Sobic007G030501 Sobic010G252500--Sobic007G030501 Sobic010G252500--Sobic004G062500 Sobic010G252500--Sobic002G003800 Sobic006G197100 Sobic006G197100 Sobic010G252500--Sobic006G197100 Sobic003G404600 Sobic003G404600 Sobic010G252500--Sobic003G404600 Sobic003G343900 Sobic003G343900 Sobic010G252500--Sobic003G343900 Sobic010G252500--Sobic003G311800 Sobic004G139300 Sobic004G139300 Sobic010G252500--Sobic004G139300 Sobic005G093000--Sobic002G329000 Sobic005G093000--Sobic001G389000 Sobic010G136000 Sobic010G136000 Sobic005G093000--Sobic010G136000 Sobic005G093000--Sobic010G195500 Sobic005G093000--Sobic010G268400 Sobic005G093000--Sobic003G429000 Sobic005G018700 Sobic005G018700 Sobic005G093000--Sobic005G018700 Sobic001G500000 Sobic001G500000 Sobic005G093000--Sobic001G500000 Sobic009G074100 Sobic009G074100 Sobic005G093000--Sobic009G074100 Sobic001G084100--Sobic001G532200 Sobic001G173300 Sobic001G173300 Sobic001G084100--Sobic001G173300 Sobic001G084100--Sobic006G156000 Sobic001G084100--Sobic010G052200 Sobic005G168100 Sobic005G168100 Sobic001G084100--Sobic005G168100 Sobic001G084100--Sobic004G212300 Sobic001G084100--Sobic003G119500 Sobic003G219800 Sobic003G219800 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic003G393900 Sobic003G393900 Sobic002G393400--Sobic003G393900 Sobic009G054800 Sobic009G054800 Sobic002G393400--Sobic009G054800 Sobic002G372400 Sobic002G372400 Sobic002G393400--Sobic002G372400 Sobic004G065500 Sobic004G065500 Sobic002G393400--Sobic004G065500 Sobic005G113300 Sobic005G113300 Sobic002G393400--Sobic005G113300 Sobic010G230700 Sobic010G230700 Sobic002G393400--Sobic010G230700 Sobic004G280700 Sobic004G280700 Sobic002G393400--Sobic004G280700 Sobic004G008400 Sobic004G008400 Sobic002G393400--Sobic004G008400 Sobic002G393400--Sobic003G037800
Octagon: transcription factors


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