Gene annotation
Transcriptome id Sobic.004G171700.1
Synonym PUB26, Sb04g022280
Functional annotation U-box domain-containing protein, putative, expressed
UniProt C5XU52
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G19380 : plant U-box 25
RAP-DB (Rice) LOC_Os02g34410.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020607 , Zm00025a031574
Brachypodium KQJ99817
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G064000 expressed protein -
2 Sobic.004G229400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
3 Sobic.008G174650 - K08064: NFYA, nuclear transcription factor Y, alpha
4 Sobic.006G187900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
5 Sobic.002G234400 white-brown complex homolog protein 11, putative, expressed -
6 Sobic.004G097100 F-box family protein, putative, expressed -
7 Sobic.009G183900 ICE-like protease p20 domain containing protein, putative, expressed -
8 Sobic.003G144800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G427800 Cupin domain containing protein, expressed -
10 Sobic.003G049700 glyoxalase family protein, putative, expressed -
11 Sobic.001G471200 membrane protein, putative, expressed -
12 Sobic.009G205500 harpin-induced protein 1 domain containing protein, expressed -
13 Sobic.007G149800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
14 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
15 Sobic.001G190100 serine/threonine-protein kinase receptor precursor, putative, expressed -
16 Sobic.007G058400 Superior methylation activity against resveratrol compared with that of sbOMT3(PubMedID : 25033820)@O-methyltransferase, putative, expressed -
17 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
18 Sobic.003G039600 expressed protein -
19 Sobic.003G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.002G351300 expressed protein -


Gene co-expression network
sample Sobic004G171700 Sobic004G171700 Sobic010G064000 Sobic010G064000 Sobic004G171700--Sobic010G064000 Sobic004G229400 Sobic004G229400 Sobic004G171700--Sobic004G229400 Sobic008G174650 Sobic008G174650 Sobic004G171700--Sobic008G174650 Sobic006G187900 Sobic006G187900 Sobic004G171700--Sobic006G187900 Sobic002G234400 Sobic002G234400 Sobic004G171700--Sobic002G234400 Sobic004G097100 Sobic004G097100 Sobic004G171700--Sobic004G097100 Sobic009G183900 Sobic009G183900 Sobic004G171700--Sobic009G183900 Sobic003G144800 Sobic003G144800 Sobic004G171700--Sobic003G144800 Sobic003G427800 Sobic003G427800 Sobic004G171700--Sobic003G427800 Sobic010G064000--Sobic003G427800 Sobic010G064000--Sobic004G229400 Sobic010G064000--Sobic004G171700 Sobic001G471200 Sobic001G471200 Sobic010G064000--Sobic001G471200 Sobic003G228900 Sobic003G228900 Sobic010G064000--Sobic003G228900 Sobic010G064000--Sobic002G234400 Sobic007G017500 Sobic007G017500 Sobic010G064000--Sobic007G017500 Sobic010G064000--Sobic004G097100 Sobic007G058400 Sobic007G058400 Sobic010G064000--Sobic007G058400 Sobic004G229400--Sobic009G183900 Sobic004G229400--Sobic002G234400 Sobic009G205500 Sobic009G205500 Sobic004G229400--Sobic009G205500 Sobic004G229400--Sobic007G058400 Sobic004G229400--Sobic003G427800 Sobic004G229500 Sobic004G229500 Sobic004G229400--Sobic004G229500 Sobic004G229400--Sobic010G064000 Sobic008G158732 Sobic008G158732 Sobic004G229400--Sobic008G158732 Sobic005G013500 Sobic005G013500 Sobic004G229400--Sobic005G013500 Sobic008G174650--Sobic004G171700 Sobic008G174650--Sobic002G234400 Sobic001G487500 Sobic001G487500 Sobic008G174650--Sobic001G487500 Sobic001G190100 Sobic001G190100 Sobic008G174650--Sobic001G190100 Sobic008G174650--Sobic004G229400 Sobic008G174650--Sobic006G187900 Sobic008G174650--Sobic004G229500 Sobic008G174650--Sobic009G183900 Sobic008G174650--Sobic010G064000 Sobic006G187900--Sobic004G097100 Sobic006G187900--Sobic004G229500 Sobic006G187900--Sobic005G013500 Sobic004G246600 Sobic004G246600 Sobic006G187900--Sobic004G246600 Sobic002G269100 Sobic002G269100 Sobic006G187900--Sobic002G269100 Sobic001G035100 Sobic001G035100 Sobic006G187900--Sobic001G035100 Sobic006G187900--Sobic009G183900 Sobic004G295600 Sobic004G295600 Sobic006G187900--Sobic004G295600 Sobic002G184300 Sobic002G184300 Sobic006G187900--Sobic002G184300 Sobic002G234400--Sobic009G183900 Sobic004G108200 Sobic004G108200 Sobic002G234400--Sobic004G108200 Sobic002G250000 Sobic002G250000 Sobic002G234400--Sobic002G250000 Sobic002G234400--Sobic004G229400 Sobic003G148300 Sobic003G148300 Sobic002G234400--Sobic003G148300 Sobic001G195200 Sobic001G195200 Sobic002G234400--Sobic001G195200 Sobic002G234400--Sobic001G487500 Sobic006G198700 Sobic006G198700 Sobic002G234400--Sobic006G198700 Sobic004G086400 Sobic004G086400 Sobic002G234400--Sobic004G086400 Sobic003G230100 Sobic003G230100 Sobic004G097100--Sobic003G230100 Sobic004G097100--Sobic004G229500 Sobic004G097100--Sobic004G246600 Sobic004G097100--Sobic006G187900 Sobic009G241801 Sobic009G241801 Sobic004G097100--Sobic009G241801 Sobic004G097100--Sobic005G013500 Sobic002G388900 Sobic002G388900 Sobic004G097100--Sobic002G388900 Sobic004G308900 Sobic004G308900 Sobic004G097100--Sobic004G308900 Sobic004G097100--Sobic002G184300 Sobic009G183900--Sobic002G234400 Sobic009G183900--Sobic005G013500 Sobic009G183900--Sobic004G229400 Sobic009G144700 Sobic009G144700 Sobic009G183900--Sobic009G144700 Sobic009G183900--Sobic004G108200 Sobic009G183900--Sobic009G205500 Sobic009G183900--Sobic004G097100 Sobic009G183900--Sobic004G229500 Sobic009G183900--Sobic002G388900 Sobic003G144800--Sobic003G230100 Sobic003G144800--Sobic004G171700 Sobic006G216700 Sobic006G216700 Sobic003G144800--Sobic006G216700 Sobic002G220000 Sobic002G220000 Sobic003G144800--Sobic002G220000 Sobic003G093000 Sobic003G093000 Sobic003G144800--Sobic003G093000 Sobic003G092900 Sobic003G092900 Sobic003G144800--Sobic003G092900 Sobic003G144800--Sobic004G097100 Sobic003G144800--Sobic010G064000 Sobic004G064500 Sobic004G064500 Sobic003G144800--Sobic004G064500 Sobic003G427800--Sobic009G205500 Sobic003G427800--Sobic004G229500 Sobic003G427800--Sobic001G195200 Sobic003G427800--Sobic004G229400 Sobic003G427800--Sobic010G064000 Sobic003G427800--Sobic008G158732 Sobic003G427800--Sobic009G183900 Sobic003G427800--Sobic007G058400 Sobic004G219800 Sobic004G219800 Sobic003G427800--Sobic004G219800
Octagon: transcription factors


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