Gene annotation
Transcriptome id Sobic.009G183900.1,Sobic.009G183900.3,Sobic.009G183900.2
Synonym Sb09g024360, AtMC4, MC4
Functional annotation ICE-like protease p20 domain containing protein, putative, expressed
UniProt A0A1B6P9D8 , A0A1B6P956 , C5Z0B7
Pfam PF00656
Panther DB PTHR31810 PTHR31810:SF5
NCBI CDD KOG1546; Metacaspase involved in regulation of apoptosis
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G79340 : metacaspase 4,metacaspase 6
RAP-DB (Rice) LOC_Os05g41670.1 : ICE-like protease p20 domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK05598 , KQK05597
Barley HORVU3Hr1G078270.1 , HORVU1Hr1G067230.1 , HORVU1Hr1G067230.7 , HORVU1Hr1G067230.6 , HORVU1Hr1G067230.5 , HORVU1Hr1G067230.4
Wheat TraesCS3B02G359200 , TraesCS3D02G322600 , TraesCS3A02G328800 , TraesCS1B02G325700 , TraesCS1D02G314300 , TraesCS1A02G313800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G234400 white-brown complex homolog protein 11, putative, expressed -
2 Sobic.005G013500 WRKY52, expressed -
3 Sobic.004G229400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
4 Sobic.009G144700 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.004G108200 cytochrome P450 93A2, putative, expressed -
6 Sobic.009G205500 harpin-induced protein 1 domain containing protein, expressed -
7 Sobic.004G097100 F-box family protein, putative, expressed -
8 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
9 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
10 Sobic.003G427800 Cupin domain containing protein, expressed -
11 Sobic.001G256800 dirigent, putative, expressed -
12 Sobic.001G195200 cytochrome P450, putative, expressed -
13 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
14 Sobic.004G228500 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.006G198700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.004G294400 expansin precursor, putative, expressed -
17 Sobic.007G017500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
18 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
20 Sobic.008G187001 - K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic009G183900 Sobic009G183900 Sobic002G234400 Sobic002G234400 Sobic009G183900--Sobic002G234400 Sobic005G013500 Sobic005G013500 Sobic009G183900--Sobic005G013500 Sobic004G229400 Sobic004G229400 Sobic009G183900--Sobic004G229400 Sobic009G144700 Sobic009G144700 Sobic009G183900--Sobic009G144700 Sobic004G108200 Sobic004G108200 Sobic009G183900--Sobic004G108200 Sobic009G205500 Sobic009G205500 Sobic009G183900--Sobic009G205500 Sobic004G097100 Sobic004G097100 Sobic009G183900--Sobic004G097100 Sobic004G229500 Sobic004G229500 Sobic009G183900--Sobic004G229500 Sobic002G388900 Sobic002G388900 Sobic009G183900--Sobic002G388900 Sobic002G234400--Sobic009G183900 Sobic002G234400--Sobic004G108200 Sobic002G250000 Sobic002G250000 Sobic002G234400--Sobic002G250000 Sobic002G234400--Sobic004G229400 Sobic003G148300 Sobic003G148300 Sobic002G234400--Sobic003G148300 Sobic001G195200 Sobic001G195200 Sobic002G234400--Sobic001G195200 Sobic001G487500 Sobic001G487500 Sobic002G234400--Sobic001G487500 Sobic006G198700 Sobic006G198700 Sobic002G234400--Sobic006G198700 Sobic004G086400 Sobic004G086400 Sobic002G234400--Sobic004G086400 Sobic005G013500--Sobic004G229500 Sobic005G013500--Sobic009G183900 Sobic004G246600 Sobic004G246600 Sobic005G013500--Sobic004G246600 Sobic009G032000 Sobic009G032000 Sobic005G013500--Sobic009G032000 Sobic005G013500--Sobic009G144700 Sobic005G013500--Sobic004G097100 Sobic001G363400 Sobic001G363400 Sobic005G013500--Sobic001G363400 Sobic004G294400 Sobic004G294400 Sobic005G013500--Sobic004G294400 Sobic005G013500--Sobic004G108200 Sobic004G229400--Sobic009G183900 Sobic004G229400--Sobic002G234400 Sobic004G229400--Sobic009G205500 Sobic007G058400 Sobic007G058400 Sobic004G229400--Sobic007G058400 Sobic003G427800 Sobic003G427800 Sobic004G229400--Sobic003G427800 Sobic004G229400--Sobic004G229500 Sobic010G064000 Sobic010G064000 Sobic004G229400--Sobic010G064000 Sobic008G158732 Sobic008G158732 Sobic004G229400--Sobic008G158732 Sobic004G229400--Sobic005G013500 Sobic009G144700--Sobic004G108200 Sobic001G330100 Sobic001G330100 Sobic009G144700--Sobic001G330100 Sobic009G144700--Sobic002G388900 Sobic004G352000 Sobic004G352000 Sobic009G144700--Sobic004G352000 Sobic001G256700 Sobic001G256700 Sobic009G144700--Sobic001G256700 Sobic001G330200 Sobic001G330200 Sobic009G144700--Sobic001G330200 Sobic009G144700--Sobic003G148300 Sobic009G144700--Sobic004G294400 Sobic002G395300 Sobic002G395300 Sobic009G144700--Sobic002G395300 Sobic004G108200--Sobic003G148300 Sobic004G108200--Sobic009G144700 Sobic004G108200--Sobic004G294400 Sobic004G108200--Sobic001G256700 Sobic004G108200--Sobic001G330100 Sobic004G004500 Sobic004G004500 Sobic004G108200--Sobic004G004500 Sobic004G108200--Sobic002G395300 Sobic004G108200--Sobic001G195200 Sobic004G108200--Sobic002G234400 Sobic009G205500--Sobic003G427800 Sobic009G205500--Sobic008G158732 Sobic009G205500--Sobic009G183900 Sobic002G184300 Sobic002G184300 Sobic009G205500--Sobic002G184300 Sobic009G205500--Sobic004G229400 Sobic009G205500--Sobic005G013500 Sobic009G205500--Sobic004G229500 Sobic002G351300 Sobic002G351300 Sobic009G205500--Sobic002G351300 Sobic009G205500--Sobic009G032000 Sobic003G230100 Sobic003G230100 Sobic004G097100--Sobic003G230100 Sobic004G097100--Sobic004G229500 Sobic004G097100--Sobic004G246600 Sobic006G187900 Sobic006G187900 Sobic004G097100--Sobic006G187900 Sobic009G241801 Sobic009G241801 Sobic004G097100--Sobic009G241801 Sobic004G097100--Sobic005G013500 Sobic004G097100--Sobic002G388900 Sobic004G308900 Sobic004G308900 Sobic004G097100--Sobic004G308900 Sobic004G097100--Sobic002G184300 Sobic004G229500--Sobic004G246600 Sobic004G229500--Sobic005G013500 Sobic004G229500--Sobic004G097100 Sobic004G229500--Sobic003G427800 Sobic004G229500--Sobic009G032000 Sobic004G229500--Sobic004G308900 Sobic004G229500--Sobic009G183900 Sobic004G229500--Sobic009G205500 Sobic004G229500--Sobic002G184300 Sobic008G187001 Sobic008G187001 Sobic002G388900--Sobic008G187001 Sobic002G388900--Sobic001G256700 Sobic002G388900--Sobic009G144700 Sobic002G388900--Sobic001G330100 Sobic002G388900--Sobic009G241801 Sobic002G388900--Sobic009G032000 Sobic002G388900--Sobic004G352000 Sobic004G219800 Sobic004G219800 Sobic002G388900--Sobic004G219800 Sobic002G388900--Sobic004G308900
Octagon: transcription factors


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