Gene annotation
| Transcriptome id | Sobic.004G229500.1 |
|---|---|
| Synonym | EXO, Sb04g027390 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) phosphate-induced protein 1 conserved region domain containing protein, expressed |
| UniProt | C5XYB7 |
| Pfam | PF04674 |
| Panther DB | PTHR31279 PTHR31279:SF14 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G08950 : Phosphate-responsive 1 family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g51970.1 : phosphate-induced protein 1 conserved region domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a033147 |
| Brachypodium | KQK01827 , KQK18937 |
| Barley | HORVU6Hr1G077790.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G246600 | expressed protein | - |
| 2 | Sobic.005G013500 | WRKY52, expressed | - |
| 3 | Sobic.004G097100 | F-box family protein, putative, expressed | - |
| 4 | Sobic.003G427800 | Cupin domain containing protein, expressed | - |
| 5 | Sobic.009G032000 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 6 | Sobic.004G308900 | AP2 domain containing protein, expressed | - |
| 7 | Sobic.009G183900 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 8 | Sobic.009G205500 | harpin-induced protein 1 domain containing protein, expressed | - |
| 9 | Sobic.002G184300 | heat shock protein DnaJ, putative, expressed | - |
| 10 | Sobic.001G143100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed | - |
| 11 | Sobic.006G187900 | "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed | K01762: 1-aminocyclopropane-1-carboxylate synthase |
| 12 | Sobic.004G229400 | phosphate-induced protein 1 conserved region domain containing protein, expressed | - |
| 13 | Sobic.002G269100 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 14 | Sobic.002G358300 | expressed protein | - |
| 15 | Sobic.007G148500 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 16 | Sobic.003G370600 | hydrolase, alpha/beta fold family domain containing protein, expressed | K07019: uncharacterized protein |
| 17 | Sobic.009G241801 | - | - |
| 18 | Sobic.002G388900 | Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed | - |
| 19 | Sobic.007G058400 | Superior methylation activity against resveratrol compared with that of sbOMT3(PubMedID : 25033820)@O-methyltransferase, putative, expressed | - |
| 20 | Sobic.001G195200 | cytochrome P450, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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