Gene annotation
Transcriptome id Sobic.005G013500.1
Synonym WRKY54, ATWRKY54, Sb05g001170
Functional annotation WRKY52, expressed
UniProt C5Y3H4
Pfam PF03106
Panther DB PTHR31282 PTHR31282:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G40750 : WRKY DNA-binding protein 54
RAP-DB (Rice) LOC_Os11g02470.1 : WRKY52, expressed
MaizeGDB (Corn) Zm00025a033309 , Zm00025a052504
Brachypodium -
Barley HORVU4Hr1G051970.1 , HORVU4Hr1G051970.2 , HORVU4Hr1G052010.2 , HORVU4Hr1G052010.1
Wheat TraesCS4A02G128100 , TraesCS4D02G178400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
2 Sobic.009G183900 ICE-like protease p20 domain containing protein, putative, expressed -
3 Sobic.004G246600 expressed protein -
4 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.009G144700 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.004G097100 F-box family protein, putative, expressed -
7 Sobic.001G363400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
8 Sobic.004G294400 expansin precursor, putative, expressed -
9 Sobic.004G108200 cytochrome P450 93A2, putative, expressed -
10 Sobic.004G352000 cytochrome P450, putative, expressed -
11 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
12 Sobic.009G205500 harpin-induced protein 1 domain containing protein, expressed -
13 Sobic.001G195200 cytochrome P450, putative, expressed -
14 Sobic.002G358300 expressed protein -
15 Sobic.004G308900 AP2 domain containing protein, expressed -
16 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
17 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
18 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
19 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
20 Sobic.003G370600 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein


Gene co-expression network
sample Sobic005G013500 Sobic005G013500 Sobic004G229500 Sobic004G229500 Sobic005G013500--Sobic004G229500 Sobic009G183900 Sobic009G183900 Sobic005G013500--Sobic009G183900 Sobic004G246600 Sobic004G246600 Sobic005G013500--Sobic004G246600 Sobic009G032000 Sobic009G032000 Sobic005G013500--Sobic009G032000 Sobic009G144700 Sobic009G144700 Sobic005G013500--Sobic009G144700 Sobic004G097100 Sobic004G097100 Sobic005G013500--Sobic004G097100 Sobic001G363400 Sobic001G363400 Sobic005G013500--Sobic001G363400 Sobic004G294400 Sobic004G294400 Sobic005G013500--Sobic004G294400 Sobic004G108200 Sobic004G108200 Sobic005G013500--Sobic004G108200 Sobic004G229500--Sobic004G246600 Sobic004G229500--Sobic005G013500 Sobic004G229500--Sobic004G097100 Sobic003G427800 Sobic003G427800 Sobic004G229500--Sobic003G427800 Sobic004G229500--Sobic009G032000 Sobic004G308900 Sobic004G308900 Sobic004G229500--Sobic004G308900 Sobic004G229500--Sobic009G183900 Sobic009G205500 Sobic009G205500 Sobic004G229500--Sobic009G205500 Sobic002G184300 Sobic002G184300 Sobic004G229500--Sobic002G184300 Sobic002G234400 Sobic002G234400 Sobic009G183900--Sobic002G234400 Sobic009G183900--Sobic005G013500 Sobic004G229400 Sobic004G229400 Sobic009G183900--Sobic004G229400 Sobic009G183900--Sobic009G144700 Sobic009G183900--Sobic004G108200 Sobic009G183900--Sobic009G205500 Sobic009G183900--Sobic004G097100 Sobic009G183900--Sobic004G229500 Sobic002G388900 Sobic002G388900 Sobic009G183900--Sobic002G388900 Sobic004G246600--Sobic004G229500 Sobic004G246600--Sobic009G032000 Sobic004G246600--Sobic004G308900 Sobic004G246600--Sobic005G013500 Sobic002G358300 Sobic002G358300 Sobic004G246600--Sobic002G358300 Sobic004G246600--Sobic004G097100 Sobic001G143100 Sobic001G143100 Sobic004G246600--Sobic001G143100 Sobic002G269100 Sobic002G269100 Sobic004G246600--Sobic002G269100 Sobic004G246600--Sobic002G184300 Sobic001G256700 Sobic001G256700 Sobic009G032000--Sobic001G256700 Sobic009G032000--Sobic002G388900 Sobic004G219800 Sobic004G219800 Sobic009G032000--Sobic004G219800 Sobic009G032000--Sobic002G358300 Sobic009G032000--Sobic004G308900 Sobic009G032000--Sobic004G246600 Sobic001G330100 Sobic001G330100 Sobic009G032000--Sobic001G330100 Sobic009G032000--Sobic005G013500 Sobic002G395300 Sobic002G395300 Sobic009G032000--Sobic002G395300 Sobic009G144700--Sobic004G108200 Sobic009G144700--Sobic001G330100 Sobic009G144700--Sobic002G388900 Sobic004G352000 Sobic004G352000 Sobic009G144700--Sobic004G352000 Sobic009G144700--Sobic001G256700 Sobic001G330200 Sobic001G330200 Sobic009G144700--Sobic001G330200 Sobic003G148300 Sobic003G148300 Sobic009G144700--Sobic003G148300 Sobic009G144700--Sobic004G294400 Sobic009G144700--Sobic002G395300 Sobic003G230100 Sobic003G230100 Sobic004G097100--Sobic003G230100 Sobic004G097100--Sobic004G229500 Sobic004G097100--Sobic004G246600 Sobic006G187900 Sobic006G187900 Sobic004G097100--Sobic006G187900 Sobic009G241801 Sobic009G241801 Sobic004G097100--Sobic009G241801 Sobic004G097100--Sobic005G013500 Sobic004G097100--Sobic002G388900 Sobic004G097100--Sobic004G308900 Sobic004G097100--Sobic002G184300 Sobic001G363400--Sobic002G184300 Sobic001G363400--Sobic001G330200 Sobic001G363400--Sobic005G013500 Sobic001G363400--Sobic009G032000 Sobic001G363400--Sobic001G330100 Sobic001G363400--Sobic002G358300 Sobic001G363400--Sobic009G144700 Sobic001G330400 Sobic001G330400 Sobic001G363400--Sobic001G330400 Sobic001G363400--Sobic004G246600 Sobic007G017500 Sobic007G017500 Sobic004G294400--Sobic007G017500 Sobic004G294400--Sobic001G256700 Sobic006G075400 Sobic006G075400 Sobic004G294400--Sobic006G075400 Sobic004G294400--Sobic004G108200 Sobic001G195200 Sobic001G195200 Sobic004G294400--Sobic001G195200 Sobic007G122800 Sobic007G122800 Sobic004G294400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G294400--Sobic003G228900 Sobic004G294400--Sobic002G395300 Sobic004G191300 Sobic004G191300 Sobic004G294400--Sobic004G191300 Sobic004G108200--Sobic003G148300 Sobic004G108200--Sobic009G144700 Sobic004G108200--Sobic004G294400 Sobic004G108200--Sobic001G256700 Sobic004G108200--Sobic001G330100 Sobic004G004500 Sobic004G004500 Sobic004G108200--Sobic004G004500 Sobic004G108200--Sobic002G395300 Sobic004G108200--Sobic001G195200 Sobic004G108200--Sobic002G234400
Octagon: transcription factors


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