Gene annotation
Transcriptome id Sobic.006G187900.1
Synonym 1-aminocyclopropane-1-carboxylic acid synthase, Sb06g026160, ACS6, ATACS6, ACS1
Functional annotation "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application" (PubMedID : 24813726)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt C5YEG4
Pfam PF00155
Panther DB PTHR11751 PTHR11751:SF284
NCBI CDD -
KEGG Orthology K01762; 1-aminocyclopropane-1-carboxylate synthase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G01480 : 1-amino-cyclopropane-1-carboxylate synthase 2
RAP-DB (Rice) LOC_Os04g48850.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010116 , Zm00025a007983 , Zm00025a056733
Brachypodium KQJ84167 , KQK13419 , PNT74204
Barley HORVU2Hr1G094230.2 , HORVU2Hr1G094230.3 , HORVU2Hr1G094230.1 , HORVU2Hr1G094230.4 , HORVU2Hr1G094230.5 , HORVU4Hr1G009800.1 , HORVU4Hr1G009800.3 , HORVU4Hr1G009800.2 , HORVU4Hr1G009800.5 , HORVU4Hr1G009800.4
Wheat TraesCS2B02G414800 , TraesCS2A02G396400 , TraesCS3B02G125200 , TraesCS4D02G058200 , TraesCS4B02G058200 , TraesCS2D02G394200 , TraesCS4A02G256500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G097100 F-box family protein, putative, expressed -
2 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
3 Sobic.005G013500 WRKY52, expressed -
4 Sobic.004G246600 expressed protein -
5 Sobic.002G269100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
6 Sobic.001G035100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@ZOS3-21 - C2H2 zinc finger protein, expressed -
7 Sobic.009G183900 ICE-like protease p20 domain containing protein, putative, expressed -
8 Sobic.004G295600 AP2 domain containing protein, expressed -
9 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
10 Sobic.002G358300 expressed protein -
11 Sobic.009G241801 - -
12 Sobic.010G064000 expressed protein -
13 Sobic.001G495132 - -
14 Sobic.004G171700 U-box domain-containing protein, putative, expressed -
15 Sobic.004G308900 AP2 domain containing protein, expressed -
16 Sobic.009G205500 harpin-induced protein 1 domain containing protein, expressed -
17 Sobic.009G194400 expressed protein -
18 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.004G228500 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.004G229400 phosphate-induced protein 1 conserved region domain containing protein, expressed -


Gene co-expression network
sample Sobic006G187900 Sobic006G187900 Sobic004G097100 Sobic004G097100 Sobic006G187900--Sobic004G097100 Sobic004G229500 Sobic004G229500 Sobic006G187900--Sobic004G229500 Sobic005G013500 Sobic005G013500 Sobic006G187900--Sobic005G013500 Sobic004G246600 Sobic004G246600 Sobic006G187900--Sobic004G246600 Sobic002G269100 Sobic002G269100 Sobic006G187900--Sobic002G269100 Sobic001G035100 Sobic001G035100 Sobic006G187900--Sobic001G035100 Sobic009G183900 Sobic009G183900 Sobic006G187900--Sobic009G183900 Sobic004G295600 Sobic004G295600 Sobic006G187900--Sobic004G295600 Sobic002G184300 Sobic002G184300 Sobic006G187900--Sobic002G184300 Sobic003G230100 Sobic003G230100 Sobic004G097100--Sobic003G230100 Sobic004G097100--Sobic004G229500 Sobic004G097100--Sobic004G246600 Sobic004G097100--Sobic006G187900 Sobic009G241801 Sobic009G241801 Sobic004G097100--Sobic009G241801 Sobic004G097100--Sobic005G013500 Sobic002G388900 Sobic002G388900 Sobic004G097100--Sobic002G388900 Sobic004G308900 Sobic004G308900 Sobic004G097100--Sobic004G308900 Sobic004G097100--Sobic002G184300 Sobic004G229500--Sobic004G246600 Sobic004G229500--Sobic005G013500 Sobic004G229500--Sobic004G097100 Sobic003G427800 Sobic003G427800 Sobic004G229500--Sobic003G427800 Sobic009G032000 Sobic009G032000 Sobic004G229500--Sobic009G032000 Sobic004G229500--Sobic004G308900 Sobic004G229500--Sobic009G183900 Sobic009G205500 Sobic009G205500 Sobic004G229500--Sobic009G205500 Sobic004G229500--Sobic002G184300 Sobic005G013500--Sobic004G229500 Sobic005G013500--Sobic009G183900 Sobic005G013500--Sobic004G246600 Sobic005G013500--Sobic009G032000 Sobic009G144700 Sobic009G144700 Sobic005G013500--Sobic009G144700 Sobic005G013500--Sobic004G097100 Sobic001G363400 Sobic001G363400 Sobic005G013500--Sobic001G363400 Sobic004G294400 Sobic004G294400 Sobic005G013500--Sobic004G294400 Sobic004G108200 Sobic004G108200 Sobic005G013500--Sobic004G108200 Sobic004G246600--Sobic004G229500 Sobic004G246600--Sobic009G032000 Sobic004G246600--Sobic004G308900 Sobic004G246600--Sobic005G013500 Sobic002G358300 Sobic002G358300 Sobic004G246600--Sobic002G358300 Sobic004G246600--Sobic004G097100 Sobic001G143100 Sobic001G143100 Sobic004G246600--Sobic001G143100 Sobic004G246600--Sobic002G269100 Sobic004G246600--Sobic002G184300 Sobic002G269100--Sobic001G143100 Sobic002G269100--Sobic004G246600 Sobic002G269100--Sobic004G295600 Sobic002G269100--Sobic004G097100 Sobic002G269100--Sobic004G308900 Sobic002G269100--Sobic002G358300 Sobic009G194400 Sobic009G194400 Sobic002G269100--Sobic009G194400 Sobic002G269100--Sobic004G229500 Sobic002G269100--Sobic006G187900 Sobic002G220000 Sobic002G220000 Sobic001G035100--Sobic002G220000 Sobic003G093000 Sobic003G093000 Sobic001G035100--Sobic003G093000 Sobic003G428700 Sobic003G428700 Sobic001G035100--Sobic003G428700 Sobic004G219800 Sobic004G219800 Sobic001G035100--Sobic004G219800 Sobic004G169200 Sobic004G169200 Sobic001G035100--Sobic004G169200 Sobic001G035100--Sobic004G097100 Sobic004G222500 Sobic004G222500 Sobic001G035100--Sobic004G222500 Sobic001G035100--Sobic009G241801 Sobic001G471200 Sobic001G471200 Sobic001G035100--Sobic001G471200 Sobic002G234400 Sobic002G234400 Sobic009G183900--Sobic002G234400 Sobic009G183900--Sobic005G013500 Sobic004G229400 Sobic004G229400 Sobic009G183900--Sobic004G229400 Sobic009G183900--Sobic009G144700 Sobic009G183900--Sobic004G108200 Sobic009G183900--Sobic009G205500 Sobic009G183900--Sobic004G097100 Sobic009G183900--Sobic004G229500 Sobic009G183900--Sobic002G388900 Sobic004G295600--Sobic002G269100 Sobic004G295600--Sobic001G143100 Sobic002G388800 Sobic002G388800 Sobic004G295600--Sobic002G388800 Sobic004G295600--Sobic006G187900 Sobic001G311900 Sobic001G311900 Sobic004G295600--Sobic001G311900 Sobic004G295600--Sobic004G229500 Sobic005G180500 Sobic005G180500 Sobic004G295600--Sobic005G180500 Sobic010G104300 Sobic010G104300 Sobic004G295600--Sobic010G104300 Sobic004G295600--Sobic004G246600 Sobic002G184300--Sobic001G363400 Sobic002G184300--Sobic003G230100 Sobic002G184300--Sobic002G358300 Sobic002G184300--Sobic004G097100 Sobic002G184300--Sobic009G032000 Sobic002G184300--Sobic009G205500 Sobic002G184300--Sobic004G246600 Sobic002G184300--Sobic005G013500 Sobic002G184300--Sobic004G308900
Octagon: transcription factors


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