Gene annotation
Transcriptome id Sobic.004G228500.1
Synonym UCC1, Sb04g027290
Functional annotation plastocyanin-like domain containing protein, putative, expressed
UniProt C5XYA6
Pfam PF02298
Panther DB PTHR33021 PTHR33021:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT1G72230 : Cupredoxin superfamily protein
RAP-DB (Rice) LOC_Os06g11490.1 : plastocyanin-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033129 , Zm00025a022168
Brachypodium KQK01811
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G144700 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.004G108200 cytochrome P450 93A2, putative, expressed -
3 Sobic.004G352000 cytochrome P450, putative, expressed -
4 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
5 Sobic.001G471200 membrane protein, putative, expressed -
6 Sobic.007G155200 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
7 Sobic.009G183900 ICE-like protease p20 domain containing protein, putative, expressed -
8 Sobic.003G148300 pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
10 Sobic.009G224100 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
11 Sobic.004G097100 F-box family protein, putative, expressed -
12 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.002G184200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
14 Sobic.002G234400 white-brown complex homolog protein 11, putative, expressed -
15 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G086400 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
17 Sobic.009G241801 - -
18 Sobic.008G187001 - K09422: transcription factor MYB, plant
19 Sobic.010G063033 - -
20 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic004G228500 Sobic004G228500 Sobic009G144700 Sobic009G144700 Sobic004G228500--Sobic009G144700 Sobic004G108200 Sobic004G108200 Sobic004G228500--Sobic004G108200 Sobic004G352000 Sobic004G352000 Sobic004G228500--Sobic004G352000 Sobic001G330100 Sobic001G330100 Sobic004G228500--Sobic001G330100 Sobic001G471200 Sobic001G471200 Sobic004G228500--Sobic001G471200 Sobic007G155200 Sobic007G155200 Sobic004G228500--Sobic007G155200 Sobic009G183900 Sobic009G183900 Sobic004G228500--Sobic009G183900 Sobic003G148300 Sobic003G148300 Sobic004G228500--Sobic003G148300 Sobic002G388900 Sobic002G388900 Sobic004G228500--Sobic002G388900 Sobic009G144700--Sobic004G108200 Sobic009G144700--Sobic001G330100 Sobic009G144700--Sobic002G388900 Sobic009G144700--Sobic004G352000 Sobic001G256700 Sobic001G256700 Sobic009G144700--Sobic001G256700 Sobic001G330200 Sobic001G330200 Sobic009G144700--Sobic001G330200 Sobic009G144700--Sobic003G148300 Sobic004G294400 Sobic004G294400 Sobic009G144700--Sobic004G294400 Sobic002G395300 Sobic002G395300 Sobic009G144700--Sobic002G395300 Sobic004G108200--Sobic003G148300 Sobic004G108200--Sobic009G144700 Sobic004G108200--Sobic004G294400 Sobic004G108200--Sobic001G256700 Sobic004G108200--Sobic001G330100 Sobic004G004500 Sobic004G004500 Sobic004G108200--Sobic004G004500 Sobic004G108200--Sobic002G395300 Sobic001G195200 Sobic001G195200 Sobic004G108200--Sobic001G195200 Sobic002G234400 Sobic002G234400 Sobic004G108200--Sobic002G234400 Sobic003G370600 Sobic003G370600 Sobic004G352000--Sobic003G370600 Sobic004G352000--Sobic009G144700 Sobic004G219800 Sobic004G219800 Sobic004G352000--Sobic004G219800 Sobic004G352000--Sobic001G256700 Sobic004G352000--Sobic001G330100 Sobic004G352000--Sobic002G388900 Sobic004G352000--Sobic004G108200 Sobic009G032000 Sobic009G032000 Sobic004G352000--Sobic009G032000 Sobic008G187001 Sobic008G187001 Sobic004G352000--Sobic008G187001 Sobic001G330100--Sobic001G330200 Sobic001G330100--Sobic009G144700 Sobic001G330100--Sobic002G388900 Sobic001G330100--Sobic001G256700 Sobic001G330100--Sobic004G219800 Sobic001G330100--Sobic002G395300 Sobic001G330100--Sobic004G108200 Sobic001G330100--Sobic004G352000 Sobic001G330100--Sobic004G294400 Sobic004G341800 Sobic004G341800 Sobic001G471200--Sobic004G341800 Sobic001G035100 Sobic001G035100 Sobic001G471200--Sobic001G035100 Sobic001G471200--Sobic004G228500 Sobic003G228900 Sobic003G228900 Sobic001G471200--Sobic003G228900 Sobic006G103000 Sobic006G103000 Sobic001G471200--Sobic006G103000 Sobic001G471200--Sobic004G219800 Sobic006G183400 Sobic006G183400 Sobic001G471200--Sobic006G183400 Sobic010G223600 Sobic010G223600 Sobic001G471200--Sobic010G223600 Sobic004G243100 Sobic004G243100 Sobic001G471200--Sobic004G243100 Sobic009G224100 Sobic009G224100 Sobic007G155200--Sobic009G224100 Sobic002G184200 Sobic002G184200 Sobic007G155200--Sobic002G184200 Sobic005G045900 Sobic005G045900 Sobic007G155200--Sobic005G045900 Sobic002G140400 Sobic002G140400 Sobic007G155200--Sobic002G140400 Sobic004G037000 Sobic004G037000 Sobic007G155200--Sobic004G037000 Sobic010G196600 Sobic010G196600 Sobic007G155200--Sobic010G196600 Sobic007G155200--Sobic004G228500 Sobic003G349600 Sobic003G349600 Sobic007G155200--Sobic003G349600 Sobic002G139400 Sobic002G139400 Sobic007G155200--Sobic002G139400 Sobic009G183900--Sobic002G234400 Sobic005G013500 Sobic005G013500 Sobic009G183900--Sobic005G013500 Sobic004G229400 Sobic004G229400 Sobic009G183900--Sobic004G229400 Sobic009G183900--Sobic009G144700 Sobic009G183900--Sobic004G108200 Sobic009G205500 Sobic009G205500 Sobic009G183900--Sobic009G205500 Sobic004G097100 Sobic004G097100 Sobic009G183900--Sobic004G097100 Sobic004G229500 Sobic004G229500 Sobic009G183900--Sobic004G229500 Sobic009G183900--Sobic002G388900 Sobic003G148300--Sobic004G108200 Sobic003G148300--Sobic004G004500 Sobic004G086400 Sobic004G086400 Sobic003G148300--Sobic004G086400 Sobic003G148300--Sobic009G144700 Sobic003G148300--Sobic004G294400 Sobic003G148300--Sobic001G256700 Sobic003G148300--Sobic001G330100 Sobic002G339000 Sobic002G339000 Sobic003G148300--Sobic002G339000 Sobic010G212800 Sobic010G212800 Sobic003G148300--Sobic010G212800 Sobic002G388900--Sobic008G187001 Sobic002G388900--Sobic001G256700 Sobic002G388900--Sobic009G144700 Sobic002G388900--Sobic001G330100 Sobic009G241801 Sobic009G241801 Sobic002G388900--Sobic009G241801 Sobic002G388900--Sobic009G032000 Sobic002G388900--Sobic004G352000 Sobic002G388900--Sobic004G219800 Sobic004G308900 Sobic004G308900 Sobic002G388900--Sobic004G308900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.