Gene annotation
Transcriptome id Sobic.001G471200.1
Synonym Sb01g044140
Functional annotation membrane protein, putative, expressed
UniProt C5WUQ0
Pfam PF03188 PF04526
Panther DB PTHR23130 PTHR23130:SF99
NCBI CDD KOG4293; Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G25290 : Auxin-responsive family protein
RAP-DB (Rice) LOC_Os03g09900.1 : membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a053183 , Zm00025a001231
Brachypodium KQK23153
Barley HORVU4Hr1G071360.8 , HORVU4Hr1G071360.2 , HORVU4Hr1G071360.1 , HORVU4Hr1G071360.7 , HORVU4Hr1G071360.6 , HORVU4Hr1G071360.5 , HORVU4Hr1G071360.4
Wheat TraesCS4D02G265000 , TraesCS4A02G044000 , TraesCS4B02G265100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
2 Sobic.001G035100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@ZOS3-21 - C2H2 zinc finger protein, expressed -
3 Sobic.004G228500 plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
5 Sobic.006G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
8 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
9 Sobic.004G243100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
12 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
13 Sobic.010G064000 expressed protein -
14 Sobic.007G017500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
15 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
16 Sobic.001G050100 Cupin domain containing protein, expressed -
17 Sobic.001G231700 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
18 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G263400 expressed protein -
20 Sobic.001G402200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed -


Gene co-expression network
sample Sobic001G471200 Sobic001G471200 Sobic004G341800 Sobic004G341800 Sobic001G471200--Sobic004G341800 Sobic001G035100 Sobic001G035100 Sobic001G471200--Sobic001G035100 Sobic004G228500 Sobic004G228500 Sobic001G471200--Sobic004G228500 Sobic003G228900 Sobic003G228900 Sobic001G471200--Sobic003G228900 Sobic006G103000 Sobic006G103000 Sobic001G471200--Sobic006G103000 Sobic004G219800 Sobic004G219800 Sobic001G471200--Sobic004G219800 Sobic006G183400 Sobic006G183400 Sobic001G471200--Sobic006G183400 Sobic010G223600 Sobic010G223600 Sobic001G471200--Sobic010G223600 Sobic004G243100 Sobic004G243100 Sobic001G471200--Sobic004G243100 Sobic009G247900 Sobic009G247900 Sobic004G341800--Sobic009G247900 Sobic004G341800--Sobic001G471200 Sobic001G322200 Sobic001G322200 Sobic004G341800--Sobic001G322200 Sobic003G428700 Sobic003G428700 Sobic004G341800--Sobic003G428700 Sobic004G222500 Sobic004G222500 Sobic004G341800--Sobic004G222500 Sobic009G122400 Sobic009G122400 Sobic004G341800--Sobic009G122400 Sobic004G341800--Sobic006G183400 Sobic004G341800--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic004G341800--Sobic002G189100 Sobic002G220000 Sobic002G220000 Sobic001G035100--Sobic002G220000 Sobic003G093000 Sobic003G093000 Sobic001G035100--Sobic003G093000 Sobic001G035100--Sobic003G428700 Sobic001G035100--Sobic004G219800 Sobic004G169200 Sobic004G169200 Sobic001G035100--Sobic004G169200 Sobic004G097100 Sobic004G097100 Sobic001G035100--Sobic004G097100 Sobic001G035100--Sobic004G222500 Sobic009G241801 Sobic009G241801 Sobic001G035100--Sobic009G241801 Sobic001G035100--Sobic001G471200 Sobic009G144700 Sobic009G144700 Sobic004G228500--Sobic009G144700 Sobic004G108200 Sobic004G108200 Sobic004G228500--Sobic004G108200 Sobic004G352000 Sobic004G352000 Sobic004G228500--Sobic004G352000 Sobic001G330100 Sobic001G330100 Sobic004G228500--Sobic001G330100 Sobic004G228500--Sobic001G471200 Sobic007G155200 Sobic007G155200 Sobic004G228500--Sobic007G155200 Sobic009G183900 Sobic009G183900 Sobic004G228500--Sobic009G183900 Sobic003G148300 Sobic003G148300 Sobic004G228500--Sobic003G148300 Sobic002G388900 Sobic002G388900 Sobic004G228500--Sobic002G388900 Sobic006G075400 Sobic006G075400 Sobic003G228900--Sobic006G075400 Sobic010G209200 Sobic010G209200 Sobic003G228900--Sobic010G209200 Sobic009G184000 Sobic009G184000 Sobic003G228900--Sobic009G184000 Sobic004G191400 Sobic004G191400 Sobic003G228900--Sobic004G191400 Sobic003G432700 Sobic003G432700 Sobic003G228900--Sobic003G432700 Sobic003G260300 Sobic003G260300 Sobic003G228900--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic003G228900--Sobic007G017500 Sobic003G228900--Sobic009G122400 Sobic001G079300 Sobic001G079300 Sobic003G228900--Sobic001G079300 Sobic001G402200 Sobic001G402200 Sobic006G103000--Sobic001G402200 Sobic006G268800 Sobic006G268800 Sobic006G103000--Sobic006G268800 Sobic001G231700 Sobic001G231700 Sobic006G103000--Sobic001G231700 Sobic001G367600 Sobic001G367600 Sobic006G103000--Sobic001G367600 Sobic009G240600 Sobic009G240600 Sobic006G103000--Sobic009G240600 Sobic010G211900 Sobic010G211900 Sobic006G103000--Sobic010G211900 Sobic003G007600 Sobic003G007600 Sobic006G103000--Sobic003G007600 Sobic007G227300 Sobic007G227300 Sobic006G103000--Sobic007G227300 Sobic001G500000 Sobic001G500000 Sobic006G103000--Sobic001G500000 Sobic001G256700 Sobic001G256700 Sobic004G219800--Sobic001G256700 Sobic004G219800--Sobic001G330100 Sobic004G219800--Sobic004G352000 Sobic001G330400 Sobic001G330400 Sobic004G219800--Sobic001G330400 Sobic009G032000 Sobic009G032000 Sobic004G219800--Sobic009G032000 Sobic008G187001 Sobic008G187001 Sobic004G219800--Sobic008G187001 Sobic004G219800--Sobic002G388900 Sobic004G219800--Sobic007G017500 Sobic004G219800--Sobic006G075400 Sobic006G179500 Sobic006G179500 Sobic006G183400--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic006G183400--Sobic002G140300 Sobic005G196800 Sobic005G196800 Sobic006G183400--Sobic005G196800 Sobic001G247300 Sobic001G247300 Sobic006G183400--Sobic001G247300 Sobic006G183400--Sobic004G222500 Sobic003G037800 Sobic003G037800 Sobic006G183400--Sobic003G037800 Sobic006G183400--Sobic009G247900 Sobic002G359300 Sobic002G359300 Sobic006G183400--Sobic002G359300 Sobic003G264500 Sobic003G264500 Sobic006G183400--Sobic003G264500 Sobic003G393900 Sobic003G393900 Sobic010G223600--Sobic003G393900 Sobic009G036000 Sobic009G036000 Sobic010G223600--Sobic009G036000 Sobic010G223600--Sobic009G247900 Sobic002G339000 Sobic002G339000 Sobic010G223600--Sobic002G339000 Sobic010G223600--Sobic009G122400 Sobic010G223600--Sobic004G169200 Sobic010G223600--Sobic001G471200 Sobic009G224100 Sobic009G224100 Sobic010G223600--Sobic009G224100 Sobic010G223600--Sobic001G035100 Sobic001G018300 Sobic001G018300 Sobic004G243100--Sobic001G018300 Sobic001G231400 Sobic001G231400 Sobic004G243100--Sobic001G231400 Sobic004G243100--Sobic009G224100 Sobic001G423800 Sobic001G423800 Sobic004G243100--Sobic001G423800 Sobic002G139400 Sobic002G139400 Sobic004G243100--Sobic002G139400 Sobic002G192000 Sobic002G192000 Sobic004G243100--Sobic002G192000 Sobic002G251000 Sobic002G251000 Sobic004G243100--Sobic002G251000 Sobic003G282901 Sobic003G282901 Sobic004G243100--Sobic003G282901 Sobic002G263400 Sobic002G263400 Sobic004G243100--Sobic002G263400
Octagon: transcription factors


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