Gene annotation
Transcriptome id Sobic.010G252500.1
Synonym SbSAUR69, SbSAUR69;small auxin up RNA, small auxin up RNA, Sb10g029060
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database" (PubMedID : 20499123)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
OsSAUR28 - Auxin-responsive SAUR gene family member, expressed
UniProt C5Z974
Pfam PF02519
Panther DB PTHR31374 PTHR31374:SF13
NCBI CDD -
KEGG Orthology K14488; SAUR family protein
Gene Ontology GO:0009733; response to auxin


Orthologs (automatic annotation)
TAIR AT3G20220 : SAUR-like auxin-responsive protein family
RAP-DB (Rice) LOC_Os06g48860.1 : OsSAUR28 - Auxin-responsive SAUR gene family member, expressed
MaizeGDB (Corn) Zm00025a018371 , Zm00025a012403
Brachypodium -
Barley HORVU7Hr1G096870.1
Wheat -
Populus -


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cDNA sequences
Sobic.010G252500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
2 Sobic.007G030501 - -
3 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
4 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
5 Sobic.006G197100 DNA binding protein, putative, expressed -
6 Sobic.003G404600 regulatory protein, putative, expressed -
7 Sobic.003G343900 expressed protein -
8 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
9 Sobic.004G139300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D10, putative, expressed -
10 Sobic.003G119500 expressed protein -
11 Sobic.010G184800 heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
12 Sobic.010G195500 reductase, putative, expressed -
13 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.006G157900 C2 domain containing protein, putative, expressed -
15 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
16 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.004G349125 - -
18 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
19 Sobic.007G176100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
20 Sobic.006G274933 - -


Gene co-expression network
sample Sobic010G252500 Sobic010G252500 Sobic007G218800 Sobic007G218800 Sobic010G252500--Sobic007G218800 Sobic007G030501 Sobic007G030501 Sobic010G252500--Sobic007G030501 Sobic004G062500 Sobic004G062500 Sobic010G252500--Sobic004G062500 Sobic002G003800 Sobic002G003800 Sobic010G252500--Sobic002G003800 Sobic006G197100 Sobic006G197100 Sobic010G252500--Sobic006G197100 Sobic003G404600 Sobic003G404600 Sobic010G252500--Sobic003G404600 Sobic003G343900 Sobic003G343900 Sobic010G252500--Sobic003G343900 Sobic003G311800 Sobic003G311800 Sobic010G252500--Sobic003G311800 Sobic004G139300 Sobic004G139300 Sobic010G252500--Sobic004G139300 Sobic008G055100 Sobic008G055100 Sobic007G218800--Sobic008G055100 Sobic002G154600 Sobic002G154600 Sobic007G218800--Sobic002G154600 Sobic007G176000 Sobic007G176000 Sobic007G218800--Sobic007G176000 Sobic007G218800--Sobic010G252500 Sobic009G088900 Sobic009G088900 Sobic007G218800--Sobic009G088900 Sobic007G218800--Sobic003G311800 Sobic001G430100 Sobic001G430100 Sobic007G218800--Sobic001G430100 Sobic001G049900 Sobic001G049900 Sobic007G218800--Sobic001G049900 Sobic010G085800 Sobic010G085800 Sobic007G218800--Sobic010G085800 Sobic007G176100 Sobic007G176100 Sobic007G030501--Sobic007G176100 Sobic007G030501--Sobic007G176000 Sobic007G030501--Sobic006G197100 Sobic003G368600 Sobic003G368600 Sobic007G030501--Sobic003G368600 Sobic004G349125 Sobic004G349125 Sobic007G030501--Sobic004G349125 Sobic007G030501--Sobic004G139300 Sobic002G261300 Sobic002G261300 Sobic007G030501--Sobic002G261300 Sobic007G030501--Sobic010G252500 Sobic002G042200 Sobic002G042200 Sobic007G030501--Sobic002G042200 Sobic004G062500--Sobic010G252500 Sobic010G195500 Sobic010G195500 Sobic004G062500--Sobic010G195500 Sobic004G212300 Sobic004G212300 Sobic004G062500--Sobic004G212300 Sobic004G062500--Sobic007G218800 Sobic004G062500--Sobic010G085800 Sobic003G119500 Sobic003G119500 Sobic004G062500--Sobic003G119500 Sobic010G268400 Sobic010G268400 Sobic004G062500--Sobic010G268400 Sobic001G494000 Sobic001G494000 Sobic004G062500--Sobic001G494000 Sobic003G219800 Sobic003G219800 Sobic004G062500--Sobic003G219800 Sobic002G003800--Sobic006G197100 Sobic004G042000 Sobic004G042000 Sobic002G003800--Sobic004G042000 Sobic002G003800--Sobic003G311800 Sobic001G302600 Sobic001G302600 Sobic002G003800--Sobic001G302600 Sobic002G003800--Sobic001G049900 Sobic001G416200 Sobic001G416200 Sobic002G003800--Sobic001G416200 Sobic004G310200 Sobic004G310200 Sobic002G003800--Sobic004G310200 Sobic003G079400 Sobic003G079400 Sobic002G003800--Sobic003G079400 Sobic001G304100 Sobic001G304100 Sobic002G003800--Sobic001G304100 Sobic006G197100--Sobic002G003800 Sobic006G197100--Sobic004G042000 Sobic006G197100--Sobic004G349125 Sobic006G197100--Sobic001G416200 Sobic004G202400 Sobic004G202400 Sobic006G197100--Sobic004G202400 Sobic001G264000 Sobic001G264000 Sobic006G197100--Sobic001G264000 Sobic006G197100--Sobic003G311800 Sobic006G197100--Sobic002G042200 Sobic006G197100--Sobic003G368600 Sobic006G059700 Sobic006G059700 Sobic003G404600--Sobic006G059700 Sobic003G366600 Sobic003G366600 Sobic003G404600--Sobic003G366600 Sobic001G147900 Sobic001G147900 Sobic003G404600--Sobic001G147900 Sobic010G185000 Sobic010G185000 Sobic003G404600--Sobic010G185000 Sobic003G404600--Sobic006G197100 Sobic004G227800 Sobic004G227800 Sobic003G404600--Sobic004G227800 Sobic004G024100 Sobic004G024100 Sobic003G404600--Sobic004G024100 Sobic004G348400 Sobic004G348400 Sobic003G404600--Sobic004G348400 Sobic003G404600--Sobic004G349125 Sobic003G343900--Sobic001G494000 Sobic001G009500 Sobic001G009500 Sobic003G343900--Sobic001G009500 Sobic003G343900--Sobic010G252500 Sobic001G389000 Sobic001G389000 Sobic003G343900--Sobic001G389000 Sobic008G106700 Sobic008G106700 Sobic003G343900--Sobic008G106700 Sobic009G179900 Sobic009G179900 Sobic003G343900--Sobic009G179900 Sobic005G093000 Sobic005G093000 Sobic003G343900--Sobic005G093000 Sobic003G429000 Sobic003G429000 Sobic003G343900--Sobic003G429000 Sobic003G417350 Sobic003G417350 Sobic003G343900--Sobic003G417350 Sobic004G297900 Sobic004G297900 Sobic003G311800--Sobic004G297900 Sobic003G311800--Sobic002G003800 Sobic003G311800--Sobic001G049900 Sobic009G109000 Sobic009G109000 Sobic003G311800--Sobic009G109000 Sobic003G311800--Sobic006G197100 Sobic006G274933 Sobic006G274933 Sobic003G311800--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic003G311800--Sobic004G042000 Sobic002G216100 Sobic002G216100 Sobic004G139300--Sobic002G216100 Sobic004G139300--Sobic002G042200 Sobic002G001700 Sobic002G001700 Sobic004G139300--Sobic002G001700 Sobic002G185800 Sobic002G185800 Sobic004G139300--Sobic002G185800 Sobic010G096400 Sobic010G096400 Sobic004G139300--Sobic010G096400 Sobic004G139300--Sobic006G197100 Sobic007G178900 Sobic007G178900 Sobic004G139300--Sobic007G178900 Sobic004G139300--Sobic007G176000 Sobic003G351600 Sobic003G351600 Sobic004G139300--Sobic003G351600
Octagon: transcription factors


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