Gene annotation
Transcriptome id Sobic.007G218800.1
Synonym SbCCoAOMT-4, CCoAOMT1, Sb07g028530, CCoAOMT;CCoAOMT;SbCCoAOMT-like genes;caffeoyl-coenzyme A O-methyltransferases-like protein
Functional annotation "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
(54% identity with SbCCoAOMT/70.9% similarity) (PubMedID : 27457122)
Functions are not investigated (PubMedID : 29721721)
caffeoyl-CoA O-methyltransferase, putative, expressed
UniProt C5YJA2
Pfam PF13578
Panther DB PTHR10509 PTHR10509:SF30
NCBI CDD KOG1663; O-methyltransferase
KEGG Orthology K18883; tricin synthase
Gene Ontology GO:0008171; O-methyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G34050 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os08g38900.1 : caffeoyl-CoA O-methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a033741 , Zm00025a033742
Brachypodium KQJ98833 , KQJ98835
Barley HORVU7Hr1G049070.3 , HORVU7Hr1G049070.2 , HORVU7Hr1G049070.1 , HORVU7Hr1G048970.5 , HORVU7Hr1G048970.4 , HORVU7Hr1G048970.7 , HORVU7Hr1G048970.6 , HORVU7Hr1G048970.1 , HORVU7Hr1G048970.3 , HORVU7Hr1G048970.2 , HORVU7Hr1G048970.9 , HORVU7Hr1G048970.8
Wheat TraesCS7B02G136000 , TraesCS7D02G239400 , TraesCS1B02G049800 , TraesCS5D02G265900 , TraesCS1D02G019000 , TraesCS7D02G239200 , TraesCS7B02G135900 , TraesCS1B02G023200 , TraesCS1B02G023200 , TraesCS4A02G442400 , TraesCS7A02G240400 , TraesCS7A02G240300
Populus -


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cDNA sequences
Sobic.007G218800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G055100 dirigent, putative, expressed -
2 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
3 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
4 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
5 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -
6 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
7 Sobic.001G430100 - -
8 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
9 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.005G061200 dirigent, putative, expressed -
11 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
12 Sobic.009G109000 expressed protein -
13 Sobic.006G197100 DNA binding protein, putative, expressed -
14 Sobic.004G349125 - -
15 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
16 Sobic.006G274933 - -
17 Sobic.001G434300 expressed protein -
18 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
19 Sobic.003G411200 CRAL/TRIO domain containing protein, expressed -
20 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G218800 Sobic007G218800 Sobic008G055100 Sobic008G055100 Sobic007G218800--Sobic008G055100 Sobic002G154600 Sobic002G154600 Sobic007G218800--Sobic002G154600 Sobic007G176000 Sobic007G176000 Sobic007G218800--Sobic007G176000 Sobic010G252500 Sobic010G252500 Sobic007G218800--Sobic010G252500 Sobic009G088900 Sobic009G088900 Sobic007G218800--Sobic009G088900 Sobic003G311800 Sobic003G311800 Sobic007G218800--Sobic003G311800 Sobic001G430100 Sobic001G430100 Sobic007G218800--Sobic001G430100 Sobic001G049900 Sobic001G049900 Sobic007G218800--Sobic001G049900 Sobic010G085800 Sobic010G085800 Sobic007G218800--Sobic010G085800 Sobic008G055100--Sobic009G088900 Sobic001G514200 Sobic001G514200 Sobic008G055100--Sobic001G514200 Sobic009G109000 Sobic009G109000 Sobic008G055100--Sobic009G109000 Sobic008G055100--Sobic007G218800 Sobic010G096400 Sobic010G096400 Sobic008G055100--Sobic010G096400 Sobic008G055100--Sobic001G049900 Sobic008G055100--Sobic007G176000 Sobic007G178900 Sobic007G178900 Sobic008G055100--Sobic007G178900 Sobic008G055100--Sobic002G154600 Sobic002G154600--Sobic007G218800 Sobic002G261500 Sobic002G261500 Sobic002G154600--Sobic002G261500 Sobic002G154600--Sobic001G430100 Sobic002G154600--Sobic009G088900 Sobic002G154600--Sobic008G055100 Sobic002G183700 Sobic002G183700 Sobic002G154600--Sobic002G183700 Sobic002G154600--Sobic003G311800 Sobic004G297900 Sobic004G297900 Sobic002G154600--Sobic004G297900 Sobic003G121100 Sobic003G121100 Sobic002G154600--Sobic003G121100 Sobic007G176100 Sobic007G176100 Sobic007G176000--Sobic007G176100 Sobic007G176000--Sobic007G178900 Sobic007G030501 Sobic007G030501 Sobic007G176000--Sobic007G030501 Sobic002G216100 Sobic002G216100 Sobic007G176000--Sobic002G216100 Sobic006G197100 Sobic006G197100 Sobic007G176000--Sobic006G197100 Sobic005G061200 Sobic005G061200 Sobic007G176000--Sobic005G061200 Sobic002G185800 Sobic002G185800 Sobic007G176000--Sobic002G185800 Sobic004G139300 Sobic004G139300 Sobic007G176000--Sobic004G139300 Sobic007G176000--Sobic008G055100 Sobic010G252500--Sobic007G218800 Sobic010G252500--Sobic007G030501 Sobic004G062500 Sobic004G062500 Sobic010G252500--Sobic004G062500 Sobic002G003800 Sobic002G003800 Sobic010G252500--Sobic002G003800 Sobic010G252500--Sobic006G197100 Sobic003G404600 Sobic003G404600 Sobic010G252500--Sobic003G404600 Sobic003G343900 Sobic003G343900 Sobic010G252500--Sobic003G343900 Sobic010G252500--Sobic003G311800 Sobic010G252500--Sobic004G139300 Sobic009G088900--Sobic008G055100 Sobic001G059700 Sobic001G059700 Sobic009G088900--Sobic001G059700 Sobic003G053400 Sobic003G053400 Sobic009G088900--Sobic003G053400 Sobic009G088900--Sobic005G061200 Sobic002G365801 Sobic002G365801 Sobic009G088900--Sobic002G365801 Sobic009G088900--Sobic002G154600 Sobic009G088900--Sobic007G218800 Sobic009G088900--Sobic002G261500 Sobic002G368300 Sobic002G368300 Sobic009G088900--Sobic002G368300 Sobic003G311800--Sobic004G297900 Sobic003G311800--Sobic002G003800 Sobic003G311800--Sobic001G049900 Sobic003G311800--Sobic009G109000 Sobic003G311800--Sobic006G197100 Sobic006G274933 Sobic006G274933 Sobic003G311800--Sobic006G274933 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic004G042000 Sobic004G042000 Sobic003G311800--Sobic004G042000 Sobic001G430100--Sobic002G183700 Sobic001G430100--Sobic003G311800 Sobic007G050200 Sobic007G050200 Sobic001G430100--Sobic007G050200 Sobic001G430100--Sobic001G049900 Sobic002G001700 Sobic002G001700 Sobic001G430100--Sobic002G001700 Sobic004G348800 Sobic004G348800 Sobic001G430100--Sobic004G348800 Sobic001G430100--Sobic004G297900 Sobic001G430100--Sobic006G197100 Sobic001G430100--Sobic009G109000 Sobic001G049900--Sobic003G311800 Sobic001G049900--Sobic002G003800 Sobic010G184800 Sobic010G184800 Sobic001G049900--Sobic010G184800 Sobic001G049900--Sobic009G109000 Sobic001G049900--Sobic001G430100 Sobic001G049900--Sobic006G197100 Sobic001G049900--Sobic008G055100 Sobic001G049900--Sobic004G042000 Sobic004G310200 Sobic004G310200 Sobic001G049900--Sobic004G310200 Sobic010G085800--Sobic001G059700 Sobic001G310300 Sobic001G310300 Sobic010G085800--Sobic001G310300 Sobic010G008400 Sobic010G008400 Sobic010G085800--Sobic010G008400 Sobic010G085800--Sobic009G109000 Sobic010G085800--Sobic004G297900 Sobic008G009400 Sobic008G009400 Sobic010G085800--Sobic008G009400 Sobic010G085800--Sobic009G088900 Sobic010G085800--Sobic003G311800 Sobic010G085800--Sobic007G218800
Octagon: transcription factors


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