Gene annotation
| Transcriptome id | Sobic.010G096400.1 |
|---|---|
| Synonym | TBL22, Sb10g008410 |
| Functional annotation | proteins of unknown function domain containing protein, expressed |
| UniProt | C5Z7F8 |
| Pfam | PF14416 PF13839 |
| Panther DB | PTHR32285 PTHR32285:SF54 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G28150 : TRICHOME BIREFRINGENCE-LIKE 22 |
|---|---|
| RAP-DB (Rice) | LOC_Os06g12820.1 : proteins of unknown function domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a042622 |
| Brachypodium | KQK18816 |
| Barley | HORVU6Hr1G072710.3 , HORVU6Hr1G072710.2 , HORVU7Hr1G039080.1 , HORVU7Hr1G039080.3 , HORVU7Hr1G039080.2 , HORVU7Hr1G039180.4 , HORVU7Hr1G039180.1 , HORVU7Hr1G039180.2 , HORVU7Hr1G039180.3 |
| Wheat | TraesCS7A02G191700 , TraesCS7D02G192700 , TraesCS7B02G096600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G055100 | dirigent, putative, expressed | - |
| 2 | Sobic.004G139300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D10, putative, expressed | - |
| 3 | Sobic.002G365550 | - | - |
| 4 | Sobic.002G365801 | - | - |
| 5 | Sobic.009G088500 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 6 | Sobic.002G216100 | cytochrome P450, putative, expressed | - |
| 7 | Sobic.001G360500 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 8 | Sobic.002G368300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed | - |
| 9 | Sobic.007G176000 | MATE efflux family protein, putative, expressed | K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| 10 | Sobic.007G178900 | CXE carboxylesterase, putative, expressed | - |
| 11 | Sobic.006G183900 | cytochrome P450, putative, expressed | - |
| 12 | Sobic.010G115700 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 13 | Sobic.004G322100 | hypro1, putative, expressed | - |
| 14 | Sobic.002G001700 | ZOS7-01 - C2H2 zinc finger protein, expressed | - |
| 15 | Sobic.004G071000 | "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 16 | Sobic.007G218800 | "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed | K18883: tricin synthase |
| 17 | Sobic.010G212500 | - | - |
| 18 | Sobic.001G430100 | - | - |
| 19 | Sobic.009G088900 | membrane associated DUF588 domain containing protein, putative, expressed | - |
| 20 | Sobic.001G455100 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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