Gene annotation
| Transcriptome id | Sobic.002G365550.1 |
|---|---|
| Synonym | - |
| Functional annotation | - |
| UniProt | A0A1W0W714 |
| Pfam | - |
| Panther DB | PTHR33088 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G09530 : hydroxyproline-rich glycoprotein family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g40860.2 : retrotransposon protein, putative, unclassified, expressed |
| MaizeGDB (Corn) | Zm00025a048675 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G365801 | - | - |
| 2 | Sobic.002G365600 | igA FC receptor precursor, putative, expressed | - |
| 3 | Sobic.002G365500 | igA FC receptor precursor, putative, expressed | - |
| 4 | Sobic.004G071000 | "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 5 | Sobic.010G115700 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 6 | Sobic.010G212500 | - | - |
| 7 | Sobic.010G096400 | proteins of unknown function domain containing protein, expressed | - |
| 8 | Sobic.002G368300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed | - |
| 9 | Sobic.003G053400 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 10 | Sobic.004G348800 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 11 | Sobic.002G404100 | annexin, putative, expressed | - |
| 12 | Sobic.001G379400 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 13 | Sobic.009G109000 | expressed protein | - |
| 14 | Sobic.007G178900 | CXE carboxylesterase, putative, expressed | - |
| 15 | Sobic.002G261500 | AIR12, putative, expressed | - |
| 16 | Sobic.006G282300 | - | - |
| 17 | Sobic.008G055100 | dirigent, putative, expressed | - |
| 18 | Sobic.002G311501 | - | - |
| 19 | Sobic.003G269500 | "CYP711A family, the cytochrome P450 homepage. Its recombinant protein did not converted CLA to 5DS or 5DS to hydroxylated 5DS."(PubMedID : 33793911)@SbMAX1a (cytochrome P450 711A enzyme in sorghum) synthesized 18-hydroxy-carlactonoic acid (18-hydroxy-CLA) directly from carlactone (CL)(PubMedID : 34970291)@cytochrome P450, putative, expressed | - |
| 20 | Sobic.006G028400 | 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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