Gene annotation
| Transcriptome id | Sobic.006G028400.1 |
|---|---|
| Synonym | Sb06g002920 |
| Functional annotation | 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed |
| UniProt | C5YCV5 |
| Pfam | PF14226 PF03171 |
| Panther DB | PTHR10209 PTHR10209:SF123 |
| NCBI CDD | KOG0143; Iron/ascorbate family oxidoreductases |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT1G06620 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g10350.1 : 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed |
| MaizeGDB (Corn) | Zm00025a055609 |
| Brachypodium | - |
| Barley | HORVU2Hr1G004200.2 , HORVU2Hr1G004200.4 , HORVU2Hr1G004200.3 , HORVU2Hr1G004200.1 , HORVU0Hr1G040020.1 , HORVU0Hr1G040020.2 , HORVU0Hr1G040020.3 , HORVU2Hr1G004180.1 , HORVU2Hr1G003900.1 |
| Wheat | TraesCS1A02G025800 , TraesCS2D02G027600 , TraesCS2D02G027600 , TraesCS2B02G038500 , TraesCS2A02G026500 , TraesCS2D02G028700 , TraesCS2D02G028700 , TraesCS2A02G026700 , TraesCS3D02G459800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G183900 | cytochrome P450, putative, expressed | - |
| 2 | Sobic.003G203600 | aldehyde dehydrogenase, putative, expressed | K12355: coniferyl-aldehyde dehydrogenase |
| 3 | Sobic.007G170300 | beta,beta-carotene 9,10-dioxygenase, putative, expressed | K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase |
| 4 | Sobic.007G109600 | expressed protein | - |
| 5 | Sobic.007G178900 | CXE carboxylesterase, putative, expressed | - |
| 6 | Sobic.002G185800 | transporter, putative, expressed | - |
| 7 | Sobic.002G365500 | igA FC receptor precursor, putative, expressed | - |
| 8 | Sobic.004G071000 | "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 9 | Sobic.002G365550 | - | - |
| 10 | Sobic.002G368300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed | - |
| 11 | Sobic.006G282300 | - | - |
| 12 | Sobic.002G404100 | annexin, putative, expressed | - |
| 13 | Sobic.001G264000 | dehydrogenase, putative, expressed | K00001: E1.1.1.1, alcohol dehydrogenase |
| 14 | Sobic.001G055400 | WRKY6, expressed | - |
| 15 | Sobic.002G365801 | - | - |
| 16 | Sobic.004G249000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 17 | Sobic.008G016000 | major facilitator superfamily antiporter, putative, expressed | - |
| 18 | Sobic.003G269600 | "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed | - |
| 19 | Sobic.010G212500 | - | - |
| 20 | Sobic.003G240400 | leaf senescence related protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
