Gene annotation
Transcriptome id Sobic.006G282300.1
Synonym -
Functional annotation -
UniProt A0A1Z5RGV6
Pfam PF00759
Panther DB PTHR22298 PTHR22298:SF39
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G65610 : Six-hairpin glycosidases superfamily protein
RAP-DB (Rice) LOC_Os04g41970.1 : endoglucanase, putative, expressed
MaizeGDB (Corn) Zm00025a010575 , Zm00025a008042 , Zm00025a056389 , Zm00025a057514 , Zm00025a016861
Brachypodium KQJ83374 , KQK13338
Barley HORVU4Hr1G011160.3 , HORVU4Hr1G011160.2 , HORVU4Hr1G011160.1 , HORVU4Hr1G011160.4 , HORVU2Hr1G085800.3 , HORVU2Hr1G085800.2 , HORVU2Hr1G085800.5 , HORVU2Hr1G085800.4
Wheat TraesCS4D02G065600 , TraesCS2D02G351300 , TraesCS2D02G351300 , TraesCS2D02G351300 , TraesCS4A02G248200 , TraesCS2A02G352800 , TraesCS2A02G352800 , TraesCS2A02G352800 , TraesCS2A02G352800 , TraesCS2B02G370600 , TraesCS2B02G370600 , TraesCS3D02G027800 , TraesCS3D02G027800 , TraesCS4B02G066700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G365550 - -
2 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
3 Sobic.002G365801 - -
4 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
5 Sobic.008G055100 dirigent, putative, expressed -
6 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
7 Sobic.010G212500 - -
8 Sobic.003G119500 expressed protein -
9 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
10 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
11 Sobic.002G368300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed -
12 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
13 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
14 Sobic.003G205600 uncharacterized protein At4g06744 precursor, putative, expressed -
15 Sobic.008G016000 major facilitator superfamily antiporter, putative, expressed -
16 Sobic.003G236600 expressed protein -
17 Sobic.006G183900 cytochrome P450, putative, expressed -
18 Sobic.004G348800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
19 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A
20 Sobic.003G269600 "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic006G282300 Sobic006G282300 Sobic002G365550 Sobic002G365550 Sobic006G282300--Sobic002G365550 Sobic004G071000 Sobic004G071000 Sobic006G282300--Sobic004G071000 Sobic002G365801 Sobic002G365801 Sobic006G282300--Sobic002G365801 Sobic006G028400 Sobic006G028400 Sobic006G282300--Sobic006G028400 Sobic008G055100 Sobic008G055100 Sobic006G282300--Sobic008G055100 Sobic010G096400 Sobic010G096400 Sobic006G282300--Sobic010G096400 Sobic010G212500 Sobic010G212500 Sobic006G282300--Sobic010G212500 Sobic003G119500 Sobic003G119500 Sobic006G282300--Sobic003G119500 Sobic007G178900 Sobic007G178900 Sobic006G282300--Sobic007G178900 Sobic002G365550--Sobic002G365801 Sobic002G365600 Sobic002G365600 Sobic002G365550--Sobic002G365600 Sobic002G365500 Sobic002G365500 Sobic002G365550--Sobic002G365500 Sobic002G365550--Sobic004G071000 Sobic010G115700 Sobic010G115700 Sobic002G365550--Sobic010G115700 Sobic002G365550--Sobic010G212500 Sobic002G365550--Sobic010G096400 Sobic002G368300 Sobic002G368300 Sobic002G365550--Sobic002G368300 Sobic003G053400 Sobic003G053400 Sobic002G365550--Sobic003G053400 Sobic004G071000--Sobic002G365801 Sobic004G071000--Sobic002G365550 Sobic004G071000--Sobic002G368300 Sobic004G071000--Sobic002G365500 Sobic004G071000--Sobic008G055100 Sobic004G071000--Sobic010G115700 Sobic004G071000--Sobic010G212500 Sobic004G071000--Sobic002G365600 Sobic004G071000--Sobic003G053400 Sobic002G365801--Sobic002G365550 Sobic002G365801--Sobic004G071000 Sobic002G365801--Sobic010G115700 Sobic002G365801--Sobic010G212500 Sobic002G365801--Sobic002G368300 Sobic002G365801--Sobic002G365500 Sobic002G365801--Sobic010G096400 Sobic001G379400 Sobic001G379400 Sobic002G365801--Sobic001G379400 Sobic009G088900 Sobic009G088900 Sobic002G365801--Sobic009G088900 Sobic006G183900 Sobic006G183900 Sobic006G028400--Sobic006G183900 Sobic003G203600 Sobic003G203600 Sobic006G028400--Sobic003G203600 Sobic007G170300 Sobic007G170300 Sobic006G028400--Sobic007G170300 Sobic007G109600 Sobic007G109600 Sobic006G028400--Sobic007G109600 Sobic006G028400--Sobic007G178900 Sobic002G185800 Sobic002G185800 Sobic006G028400--Sobic002G185800 Sobic006G028400--Sobic002G365500 Sobic006G028400--Sobic004G071000 Sobic006G028400--Sobic002G365550 Sobic008G055100--Sobic009G088900 Sobic001G514200 Sobic001G514200 Sobic008G055100--Sobic001G514200 Sobic009G109000 Sobic009G109000 Sobic008G055100--Sobic009G109000 Sobic007G218800 Sobic007G218800 Sobic008G055100--Sobic007G218800 Sobic008G055100--Sobic010G096400 Sobic001G049900 Sobic001G049900 Sobic008G055100--Sobic001G049900 Sobic007G176000 Sobic007G176000 Sobic008G055100--Sobic007G176000 Sobic008G055100--Sobic007G178900 Sobic002G154600 Sobic002G154600 Sobic008G055100--Sobic002G154600 Sobic010G096400--Sobic008G055100 Sobic004G139300 Sobic004G139300 Sobic010G096400--Sobic004G139300 Sobic010G096400--Sobic002G365550 Sobic010G096400--Sobic002G365801 Sobic009G088500 Sobic009G088500 Sobic010G096400--Sobic009G088500 Sobic002G216100 Sobic002G216100 Sobic010G096400--Sobic002G216100 Sobic001G360500 Sobic001G360500 Sobic010G096400--Sobic001G360500 Sobic010G096400--Sobic002G368300 Sobic010G096400--Sobic007G176000 Sobic002G261500 Sobic002G261500 Sobic010G212500--Sobic002G261500 Sobic004G348800 Sobic004G348800 Sobic010G212500--Sobic004G348800 Sobic010G212500--Sobic002G365801 Sobic010G212500--Sobic002G365550 Sobic001G395800 Sobic001G395800 Sobic010G212500--Sobic001G395800 Sobic010G212500--Sobic003G119500 Sobic010G212500--Sobic003G053400 Sobic003G311800 Sobic003G311800 Sobic010G212500--Sobic003G311800 Sobic010G212500--Sobic009G109000 Sobic003G119500--Sobic010G212500 Sobic003G119500--Sobic003G311800 Sobic002G003800 Sobic002G003800 Sobic003G119500--Sobic002G003800 Sobic003G119500--Sobic009G109000 Sobic003G119500--Sobic001G049900 Sobic006G274933 Sobic006G274933 Sobic003G119500--Sobic006G274933 Sobic003G119500--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic003G119500--Sobic004G297900 Sobic010G085800 Sobic010G085800 Sobic003G119500--Sobic010G085800 Sobic007G178900--Sobic007G176000 Sobic007G178900--Sobic002G216100 Sobic007G178900--Sobic004G139300 Sobic007G178900--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic007G178900--Sobic005G046700 Sobic007G178900--Sobic002G368300 Sobic006G197100 Sobic006G197100 Sobic007G178900--Sobic006G197100 Sobic007G178900--Sobic008G055100 Sobic007G176100 Sobic007G176100 Sobic007G178900--Sobic007G176100
Octagon: transcription factors


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