Gene annotation
Transcriptome id Sobic.003G236600.1
Synonym Sb03g029400
Functional annotation expressed protein
UniProt C5XF53
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g45700.1 : expressed protein
MaizeGDB (Corn) Zm00025a038678 , Zm00025a028262
Brachypodium KQK08952
Barley HORVU3Hr1G057860.4 , HORVU3Hr1G057860.3 , HORVU3Hr1G057860.2 , HORVU3Hr1G057860.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G236600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G102800 expressed protein -
2 Sobic.006G028500 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
3 Sobic.003G140700 peroxidase precursor, putative, expressed -
4 Sobic.009G199001 - -
5 Sobic.004G322100 hypro1, putative, expressed -
6 Sobic.001G238000 expansin precursor, putative, expressed -
7 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A
8 Sobic.004G110700 DNA binding protein, putative, expressed -
9 Sobic.004G306900 amino acid transporter, putative, expressed -
10 Sobic.010G138300 DUF617 domain containing protein, expressed -
11 Sobic.001G264000 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
12 Sobic.001G058300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
13 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
14 Sobic.004G038700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR5 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
15 Sobic.003G183300 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.003G203600 aldehyde dehydrogenase, putative, expressed K12355: coniferyl-aldehyde dehydrogenase
17 Sobic.004G271800 WRKY66, expressed -
18 Sobic.001G295000 cyclin, putative, expressed -
19 Sobic.006G019700 transferase family protein, putative, expressed -
20 Sobic.003G128800 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic003G236600 Sobic003G236600 Sobic008G102800 Sobic008G102800 Sobic003G236600--Sobic008G102800 Sobic006G028500 Sobic006G028500 Sobic003G236600--Sobic006G028500 Sobic003G140700 Sobic003G140700 Sobic003G236600--Sobic003G140700 Sobic009G199001 Sobic009G199001 Sobic003G236600--Sobic009G199001 Sobic004G322100 Sobic004G322100 Sobic003G236600--Sobic004G322100 Sobic001G238000 Sobic001G238000 Sobic003G236600--Sobic001G238000 Sobic002G094600 Sobic002G094600 Sobic003G236600--Sobic002G094600 Sobic004G110700 Sobic004G110700 Sobic003G236600--Sobic004G110700 Sobic004G306900 Sobic004G306900 Sobic003G236600--Sobic004G306900 Sobic006G256900 Sobic006G256900 Sobic008G102800--Sobic006G256900 Sobic008G102800--Sobic003G236600 Sobic002G001700 Sobic002G001700 Sobic008G102800--Sobic002G001700 Sobic001G430100 Sobic001G430100 Sobic008G102800--Sobic001G430100 Sobic009G221500 Sobic009G221500 Sobic008G102800--Sobic009G221500 Sobic006G197100 Sobic006G197100 Sobic008G102800--Sobic006G197100 Sobic010G138300 Sobic010G138300 Sobic008G102800--Sobic010G138300 Sobic008G102800--Sobic009G199001 Sobic001G264000 Sobic001G264000 Sobic008G102800--Sobic001G264000 Sobic006G028500--Sobic004G306900 Sobic006G019700 Sobic006G019700 Sobic006G028500--Sobic006G019700 Sobic006G028500--Sobic004G110700 Sobic001G229000 Sobic001G229000 Sobic006G028500--Sobic001G229000 Sobic003G240400 Sobic003G240400 Sobic006G028500--Sobic003G240400 Sobic010G082000 Sobic010G082000 Sobic006G028500--Sobic010G082000 Sobic006G028500--Sobic004G322100 Sobic010G152400 Sobic010G152400 Sobic006G028500--Sobic010G152400 Sobic003G000100 Sobic003G000100 Sobic006G028500--Sobic003G000100 Sobic009G219200 Sobic009G219200 Sobic003G140700--Sobic009G219200 Sobic003G064800 Sobic003G064800 Sobic003G140700--Sobic003G064800 Sobic006G225500 Sobic006G225500 Sobic003G140700--Sobic006G225500 Sobic003G140700--Sobic004G322100 Sobic001G438200 Sobic001G438200 Sobic003G140700--Sobic001G438200 Sobic002G255000 Sobic002G255000 Sobic003G140700--Sobic002G255000 Sobic001G238200 Sobic001G238200 Sobic003G140700--Sobic001G238200 Sobic005G127400 Sobic005G127400 Sobic003G140700--Sobic005G127400 Sobic003G140700--Sobic004G110700 Sobic009G199001--Sobic009G219200 Sobic010G148800 Sobic010G148800 Sobic009G199001--Sobic010G148800 Sobic001G058300 Sobic001G058300 Sobic009G199001--Sobic001G058300 Sobic009G199001--Sobic003G140700 Sobic009G199001--Sobic006G256900 Sobic007G050200 Sobic007G050200 Sobic009G199001--Sobic007G050200 Sobic009G199001--Sobic001G438200 Sobic004G209400 Sobic004G209400 Sobic009G199001--Sobic004G209400 Sobic009G074500 Sobic009G074500 Sobic009G199001--Sobic009G074500 Sobic004G322100--Sobic003G000100 Sobic004G322100--Sobic010G152400 Sobic004G322100--Sobic003G140700 Sobic004G323300 Sobic004G323300 Sobic004G322100--Sobic004G323300 Sobic004G322100--Sobic004G306900 Sobic004G322100--Sobic006G019700 Sobic004G029100 Sobic004G029100 Sobic004G322100--Sobic004G029100 Sobic004G322100--Sobic006G028500 Sobic004G322100--Sobic004G110700 Sobic002G377700 Sobic002G377700 Sobic001G238000--Sobic002G377700 Sobic001G238000--Sobic001G238200 Sobic001G238000--Sobic003G140700 Sobic001G237800 Sobic001G237800 Sobic001G238000--Sobic001G237800 Sobic001G238000--Sobic004G306900 Sobic001G238000--Sobic009G219200 Sobic001G238000--Sobic003G064800 Sobic010G162800 Sobic010G162800 Sobic001G238000--Sobic010G162800 Sobic001G238000--Sobic006G028500 Sobic004G165300 Sobic004G165300 Sobic002G094600--Sobic004G165300 Sobic001G471800 Sobic001G471800 Sobic002G094600--Sobic001G471800 Sobic002G094600--Sobic003G236600 Sobic003G183300 Sobic003G183300 Sobic002G094600--Sobic003G183300 Sobic009G008800 Sobic009G008800 Sobic002G094600--Sobic009G008800 Sobic001G484000 Sobic001G484000 Sobic002G094600--Sobic001G484000 Sobic004G193500 Sobic004G193500 Sobic002G094600--Sobic004G193500 Sobic002G146000 Sobic002G146000 Sobic002G094600--Sobic002G146000 Sobic006G282300 Sobic006G282300 Sobic002G094600--Sobic006G282300 Sobic004G110700--Sobic006G028500 Sobic003G269600 Sobic003G269600 Sobic004G110700--Sobic003G269600 Sobic006G150100 Sobic006G150100 Sobic004G110700--Sobic006G150100 Sobic004G110700--Sobic003G140700 Sobic002G003700 Sobic002G003700 Sobic004G110700--Sobic002G003700 Sobic004G110700--Sobic004G322100 Sobic004G110700--Sobic005G127400 Sobic004G110700--Sobic001G229000 Sobic004G110700--Sobic006G019700 Sobic004G306900--Sobic006G028500 Sobic004G306900--Sobic003G064800 Sobic007G086300 Sobic007G086300 Sobic004G306900--Sobic007G086300 Sobic004G306900--Sobic003G000100 Sobic004G106100 Sobic004G106100 Sobic004G306900--Sobic004G106100 Sobic004G306900--Sobic006G019700 Sobic003G319400 Sobic003G319400 Sobic004G306900--Sobic003G319400 Sobic004G306900--Sobic010G152400 Sobic004G306900--Sobic004G322100
Octagon: transcription factors


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