Gene annotation
Transcriptome id Sobic.004G249000.1
Synonym Sb04g028880
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XZC0
Pfam PF14009
Panther DB PTHR33148 PTHR33148:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37840 : -
RAP-DB (Rice) LOC_Os02g49960.1 : expressed protein
MaizeGDB (Corn) Zm00025a042704 , Zm00025a032655 , Zm00025a021925
Brachypodium PNT69518 , KQJ90172 , KQK18682
Barley -
Wheat TraesCS6D02G274400 , TraesCS7D02G208300 , TraesCS7B02G112800 , TraesCS7B02G112900 , TraesCS7A02G205500 , TraesCS7A02G205400 , TraesCS7D02G208400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G264000 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
2 Sobic.004G348800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
3 Sobic.002G404100 annexin, putative, expressed -
4 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
5 Sobic.010G212500 - -
6 Sobic.004G283900 cytochrome P450, putative, expressed -
7 Sobic.003G203600 aldehyde dehydrogenase, putative, expressed K12355: coniferyl-aldehyde dehydrogenase
8 Sobic.003G269600 "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed -
9 Sobic.002G124500 expansin precursor, putative, expressed -
10 Sobic.010G271200 expressed protein -
11 Sobic.006G028500 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
12 Sobic.003G236600 expressed protein -
13 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
14 Sobic.002G365550 - -
15 Sobic.010G148800 WRKY31, expressed -
16 Sobic.009G219200 expressed protein -
17 Sobic.004G110700 DNA binding protein, putative, expressed -
18 Sobic.010G106500 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.009G199001 - -
20 Sobic.001G455100 expressed protein -


Gene co-expression network
sample Sobic004G249000 Sobic004G249000 Sobic001G264000 Sobic001G264000 Sobic004G249000--Sobic001G264000 Sobic004G348800 Sobic004G348800 Sobic004G249000--Sobic004G348800 Sobic002G404100 Sobic002G404100 Sobic004G249000--Sobic002G404100 Sobic006G028400 Sobic006G028400 Sobic004G249000--Sobic006G028400 Sobic010G212500 Sobic010G212500 Sobic004G249000--Sobic010G212500 Sobic004G283900 Sobic004G283900 Sobic004G249000--Sobic004G283900 Sobic003G203600 Sobic003G203600 Sobic004G249000--Sobic003G203600 Sobic003G269600 Sobic003G269600 Sobic004G249000--Sobic003G269600 Sobic002G124500 Sobic002G124500 Sobic004G249000--Sobic002G124500 Sobic006G197100 Sobic006G197100 Sobic001G264000--Sobic006G197100 Sobic001G264000--Sobic004G348800 Sobic004G042000 Sobic004G042000 Sobic001G264000--Sobic004G042000 Sobic002G185800 Sobic002G185800 Sobic001G264000--Sobic002G185800 Sobic009G035300 Sobic009G035300 Sobic001G264000--Sobic009G035300 Sobic006G256900 Sobic006G256900 Sobic001G264000--Sobic006G256900 Sobic001G264000--Sobic004G249000 Sobic001G264000--Sobic003G269600 Sobic002G003800 Sobic002G003800 Sobic001G264000--Sobic002G003800 Sobic004G348800--Sobic001G264000 Sobic005G215400 Sobic005G215400 Sobic004G348800--Sobic005G215400 Sobic004G348800--Sobic010G212500 Sobic001G430100 Sobic001G430100 Sobic004G348800--Sobic001G430100 Sobic004G348800--Sobic002G003800 Sobic004G348800--Sobic006G197100 Sobic009G109000 Sobic009G109000 Sobic004G348800--Sobic009G109000 Sobic003G311800 Sobic003G311800 Sobic004G348800--Sobic003G311800 Sobic007G050200 Sobic007G050200 Sobic004G348800--Sobic007G050200 Sobic006G028500 Sobic006G028500 Sobic002G404100--Sobic006G028500 Sobic002G216100 Sobic002G216100 Sobic002G404100--Sobic002G216100 Sobic010G148800 Sobic010G148800 Sobic002G404100--Sobic010G148800 Sobic003G240400 Sobic003G240400 Sobic002G404100--Sobic003G240400 Sobic001G360500 Sobic001G360500 Sobic002G404100--Sobic001G360500 Sobic005G065900 Sobic005G065900 Sobic002G404100--Sobic005G065900 Sobic002G404100--Sobic004G348800 Sobic004G322800 Sobic004G322800 Sobic002G404100--Sobic004G322800 Sobic010G082000 Sobic010G082000 Sobic002G404100--Sobic010G082000 Sobic006G183900 Sobic006G183900 Sobic006G028400--Sobic006G183900 Sobic006G028400--Sobic003G203600 Sobic007G170300 Sobic007G170300 Sobic006G028400--Sobic007G170300 Sobic007G109600 Sobic007G109600 Sobic006G028400--Sobic007G109600 Sobic007G178900 Sobic007G178900 Sobic006G028400--Sobic007G178900 Sobic006G028400--Sobic002G185800 Sobic002G365500 Sobic002G365500 Sobic006G028400--Sobic002G365500 Sobic004G071000 Sobic004G071000 Sobic006G028400--Sobic004G071000 Sobic002G365550 Sobic002G365550 Sobic006G028400--Sobic002G365550 Sobic002G261500 Sobic002G261500 Sobic010G212500--Sobic002G261500 Sobic010G212500--Sobic004G348800 Sobic002G365801 Sobic002G365801 Sobic010G212500--Sobic002G365801 Sobic010G212500--Sobic002G365550 Sobic001G395800 Sobic001G395800 Sobic010G212500--Sobic001G395800 Sobic003G119500 Sobic003G119500 Sobic010G212500--Sobic003G119500 Sobic003G053400 Sobic003G053400 Sobic010G212500--Sobic003G053400 Sobic010G212500--Sobic003G311800 Sobic010G212500--Sobic009G109000 Sobic006G003601 Sobic006G003601 Sobic004G283900--Sobic006G003601 Sobic004G283900--Sobic004G249000 Sobic004G283900--Sobic003G203600 Sobic002G163200 Sobic002G163200 Sobic004G283900--Sobic002G163200 Sobic006G074200 Sobic006G074200 Sobic004G283900--Sobic006G074200 Sobic004G283900--Sobic002G404100 Sobic004G283900--Sobic006G183900 Sobic010G271200 Sobic010G271200 Sobic004G283900--Sobic010G271200 Sobic005G066000 Sobic005G066000 Sobic004G283900--Sobic005G066000 Sobic001G067100 Sobic001G067100 Sobic003G203600--Sobic001G067100 Sobic002G195600 Sobic002G195600 Sobic003G203600--Sobic002G195600 Sobic006G135300 Sobic006G135300 Sobic003G203600--Sobic006G135300 Sobic003G203600--Sobic010G082000 Sobic003G426500 Sobic003G426500 Sobic003G203600--Sobic003G426500 Sobic003G203600--Sobic006G028400 Sobic006G092700 Sobic006G092700 Sobic003G203600--Sobic006G092700 Sobic003G203600--Sobic007G170300 Sobic004G038700 Sobic004G038700 Sobic003G203600--Sobic004G038700 Sobic004G110700 Sobic004G110700 Sobic003G269600--Sobic004G110700 Sobic003G399600 Sobic003G399600 Sobic003G269600--Sobic003G399600 Sobic006G274933 Sobic006G274933 Sobic003G269600--Sobic006G274933 Sobic006G150100 Sobic006G150100 Sobic003G269600--Sobic006G150100 Sobic002G183700 Sobic002G183700 Sobic003G269600--Sobic002G183700 Sobic010G106500 Sobic010G106500 Sobic003G269600--Sobic010G106500 Sobic003G121100 Sobic003G121100 Sobic003G269600--Sobic003G121100 Sobic003G140700 Sobic003G140700 Sobic003G269600--Sobic003G140700 Sobic006G170600 Sobic006G170600 Sobic003G269600--Sobic006G170600 Sobic002G124500--Sobic003G053400 SobicK026900 SobicK026900 Sobic002G124500--SobicK026900 Sobic001G508532 Sobic001G508532 Sobic002G124500--Sobic001G508532 Sobic002G425000 Sobic002G425000 Sobic002G124500--Sobic002G425000 Sobic002G124500--Sobic004G348800 Sobic010G158500 Sobic010G158500 Sobic002G124500--Sobic010G158500 Sobic003G053300 Sobic003G053300 Sobic002G124500--Sobic003G053300 Sobic002G124500--Sobic010G212500 Sobic006G202600 Sobic006G202600 Sobic002G124500--Sobic006G202600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.