Gene annotation
Transcriptome id Sobic.003G053400.1
Synonym Sb03g004610
Functional annotation hydrolase, alpha/beta fold family protein, putative, expressed
UniProt A0A1B6Q1F8
Pfam PF12695
Panther DB PTHR10992 PTHR10992:SF858
NCBI CDD KOG1454; Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G21950 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g07420.1 : hydrolase, alpha/beta fold family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023291 , Zm00025a035707 , Zm00025a023289
Brachypodium -
Barley HORVU3Hr1G017100.3 , HORVU3Hr1G017100.1 , HORVU3Hr1G017100.2 , HORVU3Hr1G017100.4
Wheat TraesCS3B02G110600 , TraesCS3D02G095300 , TraesCS3A02G095100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G261500 AIR12, putative, expressed -
2 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -
3 Sobic.002G425000 VQ domain containing protein, putative, expressed -
4 Sobic.002G124500 expansin precursor, putative, expressed -
5 Sobic.009G109000 expressed protein -
6 Sobic.010G212500 - -
7 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.002G365550 - -
9 Sobic.002G365801 - -
10 Sobic.003G053300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.004G318700 OsSub22 - Putative Subtilisin homologue, expressed -
12 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
13 Sobic.004G348800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
14 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
15 Sobic.001G128500 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.008G009400 - -
17 Sobic.001G238400 expansin precursor, putative, expressed -
18 Sobic.001G059700 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.010G196000 DNA binding protein, putative, expressed -
20 Sobic.003G119500 expressed protein -


Gene co-expression network
sample Sobic003G053400 Sobic003G053400 Sobic002G261500 Sobic002G261500 Sobic003G053400--Sobic002G261500 Sobic009G088900 Sobic009G088900 Sobic003G053400--Sobic009G088900 Sobic002G425000 Sobic002G425000 Sobic003G053400--Sobic002G425000 Sobic002G124500 Sobic002G124500 Sobic003G053400--Sobic002G124500 Sobic009G109000 Sobic009G109000 Sobic003G053400--Sobic009G109000 Sobic010G212500 Sobic010G212500 Sobic003G053400--Sobic010G212500 Sobic004G297900 Sobic004G297900 Sobic003G053400--Sobic004G297900 Sobic002G365550 Sobic002G365550 Sobic003G053400--Sobic002G365550 Sobic002G365801 Sobic002G365801 Sobic003G053400--Sobic002G365801 Sobic001G238300 Sobic001G238300 Sobic002G261500--Sobic001G238300 Sobic002G261500--Sobic002G425000 Sobic002G261500--Sobic004G297900 Sobic002G261500--Sobic010G212500 Sobic002G042200 Sobic002G042200 Sobic002G261500--Sobic002G042200 Sobic002G261500--Sobic003G053400 Sobic007G050200 Sobic007G050200 Sobic002G261500--Sobic007G050200 Sobic001G379400 Sobic001G379400 Sobic002G261500--Sobic001G379400 Sobic006G260200 Sobic006G260200 Sobic002G261500--Sobic006G260200 Sobic008G055100 Sobic008G055100 Sobic009G088900--Sobic008G055100 Sobic001G059700 Sobic001G059700 Sobic009G088900--Sobic001G059700 Sobic009G088900--Sobic003G053400 Sobic005G061200 Sobic005G061200 Sobic009G088900--Sobic005G061200 Sobic009G088900--Sobic002G365801 Sobic002G154600 Sobic002G154600 Sobic009G088900--Sobic002G154600 Sobic007G218800 Sobic007G218800 Sobic009G088900--Sobic007G218800 Sobic009G088900--Sobic002G261500 Sobic002G368300 Sobic002G368300 Sobic009G088900--Sobic002G368300 Sobic002G425000--Sobic001G238300 Sobic002G425000--Sobic002G261500 Sobic008G127933 Sobic008G127933 Sobic002G425000--Sobic008G127933 Sobic001G237900 Sobic001G237900 Sobic002G425000--Sobic001G237900 Sobic002G425000--Sobic006G260200 Sobic002G425000--Sobic004G297900 SobicK026900 SobicK026900 Sobic002G425000--SobicK026900 Sobic002G425000--Sobic003G053400 Sobic006G122800 Sobic006G122800 Sobic002G425000--Sobic006G122800 Sobic002G124500--Sobic003G053400 Sobic002G124500--SobicK026900 Sobic001G508532 Sobic001G508532 Sobic002G124500--Sobic001G508532 Sobic002G124500--Sobic002G425000 Sobic004G348800 Sobic004G348800 Sobic002G124500--Sobic004G348800 Sobic010G158500 Sobic010G158500 Sobic002G124500--Sobic010G158500 Sobic003G053300 Sobic003G053300 Sobic002G124500--Sobic003G053300 Sobic002G124500--Sobic010G212500 Sobic006G202600 Sobic006G202600 Sobic002G124500--Sobic006G202600 Sobic003G311800 Sobic003G311800 Sobic009G109000--Sobic003G311800 Sobic009G109000--Sobic004G297900 Sobic001G049900 Sobic001G049900 Sobic009G109000--Sobic001G049900 Sobic009G109000--Sobic008G055100 Sobic009G109000--Sobic003G053400 Sobic003G411200 Sobic003G411200 Sobic009G109000--Sobic003G411200 Sobic009G109000--Sobic004G348800 Sobic008G009400 Sobic008G009400 Sobic009G109000--Sobic008G009400 Sobic001G430100 Sobic001G430100 Sobic009G109000--Sobic001G430100 Sobic010G212500--Sobic002G261500 Sobic010G212500--Sobic004G348800 Sobic010G212500--Sobic002G365801 Sobic010G212500--Sobic002G365550 Sobic001G395800 Sobic001G395800 Sobic010G212500--Sobic001G395800 Sobic003G119500 Sobic003G119500 Sobic010G212500--Sobic003G119500 Sobic010G212500--Sobic003G053400 Sobic010G212500--Sobic003G311800 Sobic010G212500--Sobic009G109000 Sobic004G297900--Sobic003G311800 Sobic004G297900--Sobic008G009400 Sobic006G235200 Sobic006G235200 Sobic004G297900--Sobic006G235200 Sobic004G297900--Sobic001G238300 Sobic004G295100 Sobic004G295100 Sobic004G297900--Sobic004G295100 Sobic001G300500 Sobic001G300500 Sobic004G297900--Sobic001G300500 Sobic004G297900--Sobic009G109000 Sobic004G297900--Sobic002G261500 Sobic004G297900--SobicK026900 Sobic002G365550--Sobic002G365801 Sobic002G365600 Sobic002G365600 Sobic002G365550--Sobic002G365600 Sobic002G365500 Sobic002G365500 Sobic002G365550--Sobic002G365500 Sobic004G071000 Sobic004G071000 Sobic002G365550--Sobic004G071000 Sobic010G115700 Sobic010G115700 Sobic002G365550--Sobic010G115700 Sobic002G365550--Sobic010G212500 Sobic010G096400 Sobic010G096400 Sobic002G365550--Sobic010G096400 Sobic002G365550--Sobic002G368300 Sobic002G365550--Sobic003G053400 Sobic002G365801--Sobic002G365550 Sobic002G365801--Sobic004G071000 Sobic002G365801--Sobic010G115700 Sobic002G365801--Sobic010G212500 Sobic002G365801--Sobic002G368300 Sobic002G365801--Sobic002G365500 Sobic002G365801--Sobic010G096400 Sobic002G365801--Sobic001G379400 Sobic002G365801--Sobic009G088900
Octagon: transcription factors


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