Gene annotation
Transcriptome id Sobic.004G234100.1
Synonym
Functional annotation phosphoglycerate mutase, putative, expressed
UniProt A0A194YR83
Pfam PF00300
Panther DB PTHR11931 PTHR11931:SF6
NCBI CDD KOG0235; Phosphoglycerate mutase
KEGG Orthology -
Gene Ontology GO:0016868; intramolecular transferase activity, phosphotransferases GO:0006096glycolytic process GO:0004619phosphoglycerate mutase activity


Orthologs (automatic annotation)
TAIR AT1G22170 : Phosphoglycerate mutase family protein
RAP-DB (Rice) LOC_Os02g51590.1 : phosphoglycerate mutase, putative, expressed
MaizeGDB (Corn) Zm00025a033175
Brachypodium KQK01882
Barley HORVU7Hr1G037350.4 , HORVU7Hr1G037350.19 , HORVU7Hr1G037350.13 , HORVU7Hr1G037350.12 , HORVU7Hr1G037350.11 , HORVU7Hr1G037350.10 , HORVU7Hr1G037350.17 , HORVU7Hr1G037350.16 , HORVU7Hr1G037350.15 , HORVU7Hr1G037350.14 , HORVU7Hr1G037350.18 , HORVU6Hr1G075060.18 , HORVU6Hr1G075060.19 , HORVU6Hr1G075060.14 , HORVU6Hr1G075060.15 , HORVU6Hr1G075060.16 , HORVU6Hr1G075060.17 , HORVU6Hr1G075060.10 , HORVU6Hr1G075060.11 , HORVU6Hr1G075060.12 , HORVU6Hr1G075060.21 , HORVU6Hr1G075060.20 , HORVU6Hr1G075060.22 , HORVU6Hr1G075060.6 , HORVU6Hr1G075060.7 , HORVU6Hr1G075060.4 , HORVU6Hr1G075060.5 , HORVU6Hr1G075060.2 , HORVU6Hr1G075060.3 , HORVU6Hr1G075060.1 , HORVU6Hr1G075060.8 , HORVU7Hr1G037350.20 , HORVU7Hr1G037350.3 , HORVU7Hr1G037350.2 , HORVU7Hr1G037350.1 , HORVU7Hr1G037350.7 , HORVU7Hr1G037350.6 , HORVU7Hr1G037350.5 , HORVU7Hr1G037350.9 , HORVU7Hr1G037350.8
Wheat TraesCS6D02G281900 , TraesCS6B02G331600 , TraesCS6A02G302400 , TraesCS7A02G182000 , TraesCS7A02G182000 , TraesCS7B02G086800 , TraesCS7B02G086800
Populus -


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cDNA sequences
Sobic.004G234100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C
2 Sobic.002G261300 expressed protein -
3 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
4 Sobic.009G033300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.007G030501 - -
6 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.002G250000 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed -
8 Sobic.007G176100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.010G029700 tentative name(PubMedID : 31536532)@oxidoreductase, putative, expressed -
10 Sobic.002G393400 chaperonin, putative, expressed K04078: groES, chaperonin GroES
11 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
12 Sobic.004G264000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
13 Sobic.002G287100 flavin-containing monooxygenase family protein, putative, expressed -
14 Sobic.001G430100 - -
15 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
16 Sobic.003G119500 expressed protein -
17 Sobic.001G360400 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.001G264700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed -
20 Sobic.006G197100 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G234100 Sobic004G234100 Sobic010G239500 Sobic010G239500 Sobic004G234100--Sobic010G239500 Sobic002G261300 Sobic002G261300 Sobic004G234100--Sobic002G261300 Sobic009G181800 Sobic009G181800 Sobic004G234100--Sobic009G181800 Sobic009G033300 Sobic009G033300 Sobic004G234100--Sobic009G033300 Sobic007G030501 Sobic007G030501 Sobic004G234100--Sobic007G030501 Sobic002G003800 Sobic002G003800 Sobic004G234100--Sobic002G003800 Sobic002G250000 Sobic002G250000 Sobic004G234100--Sobic002G250000 Sobic007G176100 Sobic007G176100 Sobic004G234100--Sobic007G176100 Sobic010G029700 Sobic010G029700 Sobic004G234100--Sobic010G029700 Sobic002G175100 Sobic002G175100 Sobic010G239500--Sobic002G175100 Sobic002G081600 Sobic002G081600 Sobic010G239500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic010G239500--Sobic001G374700 Sobic002G398901 Sobic002G398901 Sobic010G239500--Sobic002G398901 Sobic006G213000 Sobic006G213000 Sobic010G239500--Sobic006G213000 Sobic001G481400 Sobic001G481400 Sobic010G239500--Sobic001G481400 Sobic006G137100 Sobic006G137100 Sobic010G239500--Sobic006G137100 Sobic009G240600 Sobic009G240600 Sobic010G239500--Sobic009G240600 Sobic006G116700 Sobic006G116700 Sobic010G239500--Sobic006G116700 Sobic007G164400 Sobic007G164400 Sobic002G261300--Sobic007G164400 Sobic002G261300--Sobic007G030501 Sobic001G159900 Sobic001G159900 Sobic002G261300--Sobic001G159900 Sobic002G261300--Sobic004G234100 Sobic001G434800 Sobic001G434800 Sobic002G261300--Sobic001G434800 Sobic006G277800 Sobic006G277800 Sobic002G261300--Sobic006G277800 Sobic001G360400 Sobic001G360400 Sobic002G261300--Sobic001G360400 Sobic002G354200 Sobic002G354200 Sobic002G261300--Sobic002G354200 Sobic002G261300--Sobic002G250000 Sobic001G418100 Sobic001G418100 Sobic009G181800--Sobic001G418100 Sobic003G219800 Sobic003G219800 Sobic009G181800--Sobic003G219800 Sobic010G252401 Sobic010G252401 Sobic009G181800--Sobic010G252401 Sobic008G186100 Sobic008G186100 Sobic009G181800--Sobic008G186100 Sobic005G113300 Sobic005G113300 Sobic009G181800--Sobic005G113300 Sobic003G027400 Sobic003G027400 Sobic009G181800--Sobic003G027400 Sobic002G393400 Sobic002G393400 Sobic009G181800--Sobic002G393400 Sobic009G181800--Sobic002G250000 Sobic004G310200 Sobic004G310200 Sobic009G181800--Sobic004G310200 Sobic002G287100 Sobic002G287100 Sobic009G033300--Sobic002G287100 Sobic006G249300 Sobic006G249300 Sobic009G033300--Sobic006G249300 Sobic001G500000 Sobic001G500000 Sobic009G033300--Sobic001G500000 Sobic009G033300--Sobic008G186100 Sobic009G033300--Sobic002G250000 Sobic004G100700 Sobic004G100700 Sobic009G033300--Sobic004G100700 Sobic001G476500 Sobic001G476500 Sobic009G033300--Sobic001G476500 Sobic009G170700 Sobic009G170700 Sobic009G033300--Sobic009G170700 Sobic001G139100 Sobic001G139100 Sobic009G033300--Sobic001G139100 Sobic007G030501--Sobic007G176100 Sobic007G176000 Sobic007G176000 Sobic007G030501--Sobic007G176000 Sobic006G197100 Sobic006G197100 Sobic007G030501--Sobic006G197100 Sobic003G368600 Sobic003G368600 Sobic007G030501--Sobic003G368600 Sobic004G349125 Sobic004G349125 Sobic007G030501--Sobic004G349125 Sobic004G139300 Sobic004G139300 Sobic007G030501--Sobic004G139300 Sobic007G030501--Sobic002G261300 Sobic010G252500 Sobic010G252500 Sobic007G030501--Sobic010G252500 Sobic002G042200 Sobic002G042200 Sobic007G030501--Sobic002G042200 Sobic002G003800--Sobic006G197100 Sobic004G042000 Sobic004G042000 Sobic002G003800--Sobic004G042000 Sobic003G311800 Sobic003G311800 Sobic002G003800--Sobic003G311800 Sobic001G302600 Sobic001G302600 Sobic002G003800--Sobic001G302600 Sobic001G049900 Sobic001G049900 Sobic002G003800--Sobic001G049900 Sobic001G416200 Sobic001G416200 Sobic002G003800--Sobic001G416200 Sobic002G003800--Sobic004G310200 Sobic003G079400 Sobic003G079400 Sobic002G003800--Sobic003G079400 Sobic001G304100 Sobic001G304100 Sobic002G003800--Sobic001G304100 Sobic002G234400 Sobic002G234400 Sobic002G250000--Sobic002G234400 Sobic001G397300 Sobic001G397300 Sobic002G250000--Sobic001G397300 Sobic002G250000--Sobic010G029700 Sobic002G250000--Sobic008G186100 Sobic005G011300 Sobic005G011300 Sobic002G250000--Sobic005G011300 Sobic007G006300 Sobic007G006300 Sobic002G250000--Sobic007G006300 Sobic004G108200 Sobic004G108200 Sobic002G250000--Sobic004G108200 Sobic002G250000--Sobic002G287100 Sobic003G033900 Sobic003G033900 Sobic002G250000--Sobic003G033900 Sobic007G176100--Sobic007G176000 Sobic007G176100--Sobic007G030501 Sobic002G185800 Sobic002G185800 Sobic007G176100--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic007G176100--Sobic005G046700 Sobic008G048400 Sobic008G048400 Sobic007G176100--Sobic008G048400 Sobic007G178900 Sobic007G178900 Sobic007G176100--Sobic007G178900 Sobic002G216100 Sobic002G216100 Sobic007G176100--Sobic002G216100 Sobic007G176100--Sobic004G139300 Sobic007G176100--Sobic006G197100 Sobic010G029700--Sobic008G186100 Sobic010G029700--Sobic002G250000 Sobic010G184800 Sobic010G184800 Sobic010G029700--Sobic010G184800 Sobic010G029700--Sobic002G287100 Sobic003G417200 Sobic003G417200 Sobic010G029700--Sobic003G417200 Sobic002G176100 Sobic002G176100 Sobic010G029700--Sobic002G176100 Sobic010G029700--Sobic002G003800 Sobic010G029700--Sobic001G049900 Sobic010G029700--Sobic001G304100
Octagon: transcription factors


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