Gene annotation
Transcriptome id Sobic.001G264700.1
Synonym ROC3, Sb01g025840
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt C5WNZ3
Pfam PF00160
Panther DB PTHR11071 PTHR11071:SF301
NCBI CDD KOG0865; Cyclophilin type peptidyl-prolyl cis-trans isomerase
KEGG Orthology -
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT2G16600 : rotamase CYP 3
RAP-DB (Rice) LOC_Os10g06630.1 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a003805 , Zm00025a020506 , Zm00025a020505
Brachypodium KQJ92978 , KQJ96092
Barley HORVU6Hr1G012570.4 , HORVU6Hr1G012570.3 , HORVU6Hr1G012570.2 , HORVU6Hr1G012570.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G264700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G250000 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed -
3 Sobic.002G188900 cytokinin-O-glucosyltransferase 1, putative, expressed -
4 Sobic.006G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G114800 - -
6 Sobic.001G471200 membrane protein, putative, expressed -
7 Sobic.002G287100 flavin-containing monooxygenase family protein, putative, expressed -
8 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.001G231700 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
10 Sobic.009G240600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed -
11 Sobic.004G108200 cytochrome P450 93A2, putative, expressed -
12 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
13 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
14 Sobic.002G354200 transporter family protein, putative, expressed -
15 Sobic.007G169900 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
16 Sobic.002G393400 chaperonin, putative, expressed K04078: groES, chaperonin GroES
17 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -
18 Sobic.009G033300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.007G017500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
20 Sobic.003G033900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase


Gene co-expression network
sample Sobic001G264700 Sobic001G264700 Sobic001G500000 Sobic001G500000 Sobic001G264700--Sobic001G500000 Sobic002G250000 Sobic002G250000 Sobic001G264700--Sobic002G250000 Sobic002G188900 Sobic002G188900 Sobic001G264700--Sobic002G188900 Sobic006G103000 Sobic006G103000 Sobic001G264700--Sobic006G103000 Sobic001G114800 Sobic001G114800 Sobic001G264700--Sobic001G114800 Sobic001G471200 Sobic001G471200 Sobic001G264700--Sobic001G471200 Sobic002G287100 Sobic002G287100 Sobic001G264700--Sobic002G287100 Sobic005G011300 Sobic005G011300 Sobic001G264700--Sobic005G011300 Sobic001G231700 Sobic001G231700 Sobic001G264700--Sobic001G231700 Sobic003G084400 Sobic003G084400 Sobic001G500000--Sobic003G084400 Sobic001G500000--Sobic002G287100 Sobic001G481400 Sobic001G481400 Sobic001G500000--Sobic001G481400 Sobic009G240600 Sobic009G240600 Sobic001G500000--Sobic009G240600 Sobic004G046200 Sobic004G046200 Sobic001G500000--Sobic004G046200 Sobic001G367600 Sobic001G367600 Sobic001G500000--Sobic001G367600 Sobic009G111000 Sobic009G111000 Sobic001G500000--Sobic009G111000 Sobic001G500000--Sobic001G231700 Sobic001G500000--Sobic006G103000 Sobic002G234400 Sobic002G234400 Sobic002G250000--Sobic002G234400 Sobic001G397300 Sobic001G397300 Sobic002G250000--Sobic001G397300 Sobic010G029700 Sobic010G029700 Sobic002G250000--Sobic010G029700 Sobic008G186100 Sobic008G186100 Sobic002G250000--Sobic008G186100 Sobic002G250000--Sobic005G011300 Sobic007G006300 Sobic007G006300 Sobic002G250000--Sobic007G006300 Sobic004G108200 Sobic004G108200 Sobic002G250000--Sobic004G108200 Sobic002G250000--Sobic002G287100 Sobic003G033900 Sobic003G033900 Sobic002G250000--Sobic003G033900 Sobic004G100700 Sobic004G100700 Sobic002G188900--Sobic004G100700 Sobic002G188900--Sobic005G011300 Sobic002G188900--Sobic003G033900 Sobic001G140900 Sobic001G140900 Sobic002G188900--Sobic001G140900 Sobic004G141200 Sobic004G141200 Sobic002G188900--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic002G188900--Sobic003G393900 Sobic001G108200 Sobic001G108200 Sobic002G188900--Sobic001G108200 Sobic004G304625 Sobic004G304625 Sobic002G188900--Sobic004G304625 Sobic007G057000 Sobic007G057000 Sobic002G188900--Sobic007G057000 Sobic001G402200 Sobic001G402200 Sobic006G103000--Sobic001G402200 Sobic006G268800 Sobic006G268800 Sobic006G103000--Sobic006G268800 Sobic006G103000--Sobic001G231700 Sobic006G103000--Sobic001G367600 Sobic006G103000--Sobic009G240600 Sobic010G211900 Sobic010G211900 Sobic006G103000--Sobic010G211900 Sobic003G007600 Sobic003G007600 Sobic006G103000--Sobic003G007600 Sobic007G227300 Sobic007G227300 Sobic006G103000--Sobic007G227300 Sobic006G103000--Sobic001G500000 Sobic003G214100 Sobic003G214100 Sobic001G114800--Sobic003G214100 Sobic003G264400 Sobic003G264400 Sobic001G114800--Sobic003G264400 Sobic001G114800--Sobic002G188900 Sobic004G243100 Sobic004G243100 Sobic001G114800--Sobic004G243100 Sobic002G354100 Sobic002G354100 Sobic001G114800--Sobic002G354100 Sobic001G114800--Sobic001G231700 Sobic001G018300 Sobic001G018300 Sobic001G114800--Sobic001G018300 Sobic006G277600 Sobic006G277600 Sobic001G114800--Sobic006G277600 Sobic003G427800 Sobic003G427800 Sobic001G114800--Sobic003G427800 Sobic004G341800 Sobic004G341800 Sobic001G471200--Sobic004G341800 Sobic001G035100 Sobic001G035100 Sobic001G471200--Sobic001G035100 Sobic004G228500 Sobic004G228500 Sobic001G471200--Sobic004G228500 Sobic003G228900 Sobic003G228900 Sobic001G471200--Sobic003G228900 Sobic001G471200--Sobic006G103000 Sobic004G219800 Sobic004G219800 Sobic001G471200--Sobic004G219800 Sobic006G183400 Sobic006G183400 Sobic001G471200--Sobic006G183400 Sobic010G223600 Sobic010G223600 Sobic001G471200--Sobic010G223600 Sobic001G471200--Sobic004G243100 Sobic002G287100--Sobic001G500000 Sobic002G287100--Sobic008G186100 Sobic001G476500 Sobic001G476500 Sobic002G287100--Sobic001G476500 Sobic002G287100--Sobic009G240600 Sobic009G033300 Sobic009G033300 Sobic002G287100--Sobic009G033300 Sobic002G287100--Sobic001G481400 Sobic009G183400 Sobic009G183400 Sobic002G287100--Sobic009G183400 Sobic002G287100--Sobic010G029700 Sobic006G092500 Sobic006G092500 Sobic002G287100--Sobic006G092500 Sobic005G011300--Sobic004G100700 Sobic001G169500 Sobic001G169500 Sobic005G011300--Sobic001G169500 Sobic005G011300--Sobic002G188900 Sobic005G107900 Sobic005G107900 Sobic005G011300--Sobic005G107900 Sobic003G432700 Sobic003G432700 Sobic005G011300--Sobic003G432700 Sobic005G011300--Sobic004G141200 Sobic005G011300--Sobic001G140900 Sobic005G011300--Sobic003G084400 Sobic004G171400 Sobic004G171400 Sobic005G011300--Sobic004G171400 Sobic001G231700--Sobic006G277600 Sobic001G231700--Sobic001G402200 Sobic001G231700--Sobic001G367600 Sobic001G231700--Sobic006G103000 Sobic001G231700--Sobic009G240600 Sobic006G234800 Sobic006G234800 Sobic001G231700--Sobic006G234800 Sobic001G231700--Sobic001G481400 Sobic001G231700--Sobic001G500000 Sobic001G231700--Sobic002G188900
Octagon: transcription factors


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