Gene annotation
Transcriptome id Sobic.010G052200.1
Synonym SbCCoAOMT-1;caffeoyl-CoA O-methyltransferase, SbCCoAOMT;caffeoyl-coenzyme A O-methyltransferases, SbCCoAOMT, CCoAOMT1, Sb10g004540, CCoAOMT;CCoAOMT;caffeoyl-CoA O-methyltransferase
Functional annotation "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
S-adenosyl methionine (SAM)-dependent O-methyltransferase (PubMedID : 30289910)
enzyme involved in monolignol synthesis (PubMedID : 29721721)
caffeoyl-CoA O-methyltransferase (PubMedID : 27457122)
caffeoyl-CoA O-methyltransferase, putative, expressed
UniProt C5Z4W3
Pfam PF13578
Panther DB PTHR10509 PTHR10509:SF23
NCBI CDD KOG1663; O-methyltransferase
KEGG Orthology K00588; caffeoyl-CoA O-methyltransferase
Gene Ontology GO:0008171; O-methyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G34050 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os06g06980.1 : caffeoyl-CoA O-methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a049907 , Zm00025a041616 , Zm00025a040514
Brachypodium KQK19461
Barley HORVU7Hr1G026680.7 , HORVU7Hr1G026680.5 , HORVU7Hr1G026680.3 , HORVU7Hr1G026680.2 , HORVU7Hr1G026680.1 , HORVU7Hr1G026680.6 , HORVU7Hr1G026680.4
Wheat TraesCS7B02G027200 , TraesCS7D02G126000 , TraesCS7A02G127600
Populus -


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cDNA sequences
Sobic.010G052200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
2 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
3 Sobic.001G532200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsRhmbd7 - Putative Rhomboid homologue, expressed -
4 Sobic.002G128800 fiber protein Fb34, putative, expressed -
5 Sobic.007G124301 - -
6 Sobic.010G252401 - K14488: SAUR family protein
7 Sobic.003G037800 transferase family protein, putative, expressed -
8 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
9 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
10 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
11 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
12 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
13 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
14 Sobic.002G393400 chaperonin, putative, expressed K04078: groES, chaperonin GroES
15 Sobic.003G219800 transferase family protein, putative, expressed -
16 Sobic.010G065900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@formin-like protein 13, putative, expressed -
17 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
18 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
19 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
20 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1


Gene co-expression network
sample Sobic010G052200 Sobic010G052200 Sobic004G212300 Sobic004G212300 Sobic010G052200--Sobic004G212300 Sobic001G084100 Sobic001G084100 Sobic010G052200--Sobic001G084100 Sobic001G532200 Sobic001G532200 Sobic010G052200--Sobic001G532200 Sobic002G128800 Sobic002G128800 Sobic010G052200--Sobic002G128800 Sobic007G124301 Sobic007G124301 Sobic010G052200--Sobic007G124301 Sobic010G252401 Sobic010G252401 Sobic010G052200--Sobic010G252401 Sobic003G037800 Sobic003G037800 Sobic010G052200--Sobic003G037800 Sobic005G113300 Sobic005G113300 Sobic010G052200--Sobic005G113300 Sobic006G156000 Sobic006G156000 Sobic010G052200--Sobic006G156000 Sobic004G212300--Sobic010G052200 Sobic004G212300--Sobic001G532200 Sobic003G119500 Sobic003G119500 Sobic004G212300--Sobic003G119500 Sobic004G062500 Sobic004G062500 Sobic004G212300--Sobic004G062500 Sobic004G212300--Sobic001G084100 Sobic001G516600 Sobic001G516600 Sobic004G212300--Sobic001G516600 Sobic004G212300--Sobic006G156000 Sobic002G040600 Sobic002G040600 Sobic004G212300--Sobic002G040600 Sobic010G252500 Sobic010G252500 Sobic004G212300--Sobic010G252500 Sobic001G084100--Sobic001G532200 Sobic001G173300 Sobic001G173300 Sobic001G084100--Sobic001G173300 Sobic001G084100--Sobic006G156000 Sobic001G084100--Sobic010G052200 Sobic005G168100 Sobic005G168100 Sobic001G084100--Sobic005G168100 Sobic001G084100--Sobic004G212300 Sobic001G084100--Sobic003G119500 Sobic003G219800 Sobic003G219800 Sobic001G084100--Sobic003G219800 Sobic001G418100 Sobic001G418100 Sobic001G084100--Sobic001G418100 Sobic001G532200--Sobic001G516600 Sobic001G532200--Sobic001G084100 Sobic001G532200--Sobic004G212300 Sobic001G513700 Sobic001G513700 Sobic001G532200--Sobic001G513700 Sobic009G248500 Sobic009G248500 Sobic001G532200--Sobic009G248500 Sobic007G151100 Sobic007G151100 Sobic001G532200--Sobic007G151100 Sobic001G532200--Sobic010G052200 Sobic009G073300 Sobic009G073300 Sobic001G532200--Sobic009G073300 Sobic009G027900 Sobic009G027900 Sobic001G532200--Sobic009G027900 Sobic002G252000 Sobic002G252000 Sobic002G128800--Sobic002G252000 Sobic007G150800 Sobic007G150800 Sobic002G128800--Sobic007G150800 Sobic002G128800--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G128800--Sobic002G396400 Sobic001G475500 Sobic001G475500 Sobic002G128800--Sobic001G475500 Sobic002G128800--Sobic010G052200 Sobic002G128800--Sobic006G156000 Sobic002G128800--Sobic003G219800 Sobic003G443300 Sobic003G443300 Sobic002G128800--Sobic003G443300 Sobic002G272900 Sobic002G272900 Sobic007G124301--Sobic002G272900 Sobic007G124301--Sobic010G052200 Sobic001G389000 Sobic001G389000 Sobic007G124301--Sobic001G389000 Sobic007G124301--Sobic003G037800 Sobic002G202600 Sobic002G202600 Sobic007G124301--Sobic002G202600 Sobic001G459800 Sobic001G459800 Sobic007G124301--Sobic001G459800 Sobic001G483400 Sobic001G483400 Sobic007G124301--Sobic001G483400 Sobic009G183300 Sobic009G183300 Sobic007G124301--Sobic009G183300 Sobic007G124301--Sobic009G073300 Sobic004G310200 Sobic004G310200 Sobic010G252401--Sobic004G310200 Sobic002G003800 Sobic002G003800 Sobic010G252401--Sobic002G003800 Sobic009G181800 Sobic009G181800 Sobic010G252401--Sobic009G181800 Sobic004G042000 Sobic004G042000 Sobic010G252401--Sobic004G042000 Sobic003G319500 Sobic003G319500 Sobic010G252401--Sobic003G319500 Sobic001G500000 Sobic001G500000 Sobic010G252401--Sobic001G500000 Sobic004G046200 Sobic004G046200 Sobic010G252401--Sobic004G046200 Sobic010G184800 Sobic010G184800 Sobic010G252401--Sobic010G184800 Sobic001G139100 Sobic001G139100 Sobic010G252401--Sobic001G139100 Sobic003G429000 Sobic003G429000 Sobic003G037800--Sobic003G429000 Sobic002G245100 Sobic002G245100 Sobic003G037800--Sobic002G245100 Sobic003G037800--Sobic001G389000 Sobic009G033700 Sobic009G033700 Sobic003G037800--Sobic009G033700 Sobic009G159400 Sobic009G159400 Sobic003G037800--Sobic009G159400 Sobic005G018700 Sobic005G018700 Sobic003G037800--Sobic005G018700 Sobic006G183400 Sobic006G183400 Sobic003G037800--Sobic006G183400 Sobic004G321300 Sobic004G321300 Sobic003G037800--Sobic004G321300 Sobic004G340900 Sobic004G340900 Sobic003G037800--Sobic004G340900 Sobic004G220000 Sobic004G220000 Sobic005G113300--Sobic004G220000 Sobic001G295200 Sobic001G295200 Sobic005G113300--Sobic001G295200 Sobic001G361600 Sobic001G361600 Sobic005G113300--Sobic001G361600 Sobic006G116700 Sobic006G116700 Sobic005G113300--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic005G113300--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic003G160700 Sobic003G160700 Sobic005G113300--Sobic003G160700 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic006G156000--Sobic005G168100 Sobic006G156000--Sobic003G219800 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100
Octagon: transcription factors


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