Gene annotation
Transcriptome id Sobic.005G168100.1
Synonym ARFC1, Sb05g022850, ATARFC1
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt C5Y5C3
Pfam PF08477
Panther DB PTHR11711 PTHR11711:SF31
NCBI CDD KOG0070; GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07950; ADP-ribosylation factor-like protein 5B
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT3G22950 : ADP-ribosylation factor C1
RAP-DB (Rice) LOC_Os11g37640.1 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a033915
Brachypodium KQJ88025
Barley -
Wheat TraesCS4A02G149200 , TraesCS4B02G164400 , TraesCS4D02G152600
Populus -


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cDNA sequences
Sobic.005G168100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
2 Sobic.001G432000 LYR motif containing protein, putative, expressed -
3 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
4 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
5 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
6 Sobic.002G296200 expressed protein -
7 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
8 Sobic.003G215700 ATP synthase epsilon chain, mitochondrial, putative, expressed K02135: ATPeF1E, ATP5E, F-type H+-transporting ATPase subunit epsilon
9 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
10 Sobic.001G018500 expressed protein K17784: MINOS1, mitochondrial inner membrane organizing system protein 1
11 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
12 Sobic.006G083500 SLL1 protein, putative, expressed -
13 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
14 Sobic.004G259600 slowmo homolog, putative, expressed -
15 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
16 Sobic.003G037800 transferase family protein, putative, expressed -
17 Sobic.007G134900 expressed protein -
18 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
19 Sobic.004G060500 fiber protein Fb15, putative, expressed -
20 Sobic.009G176000 expressed protein K03945: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1


Gene co-expression network
sample Sobic005G168100 Sobic005G168100 Sobic009G232900 Sobic009G232900 Sobic005G168100--Sobic009G232900 Sobic001G432000 Sobic001G432000 Sobic005G168100--Sobic001G432000 Sobic006G156000 Sobic006G156000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic005G168100--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic003G150000 Sobic003G150000 Sobic005G168100--Sobic003G150000 Sobic009G232900--Sobic005G168100 Sobic009G232900--Sobic001G432000 Sobic009G232900--Sobic003G150000 Sobic010G204500 Sobic010G204500 Sobic009G232900--Sobic010G204500 Sobic009G232900--Sobic002G296200 Sobic007G134900 Sobic007G134900 Sobic009G232900--Sobic007G134900 Sobic003G063200 Sobic003G063200 Sobic009G232900--Sobic003G063200 Sobic010G251600 Sobic010G251600 Sobic009G232900--Sobic010G251600 Sobic001G128400 Sobic001G128400 Sobic009G232900--Sobic001G128400 Sobic001G432000--Sobic010G251600 Sobic001G432000--Sobic005G168100 Sobic001G304400 Sobic001G304400 Sobic001G432000--Sobic001G304400 Sobic001G432000--Sobic009G232900 Sobic007G019400 Sobic007G019400 Sobic001G432000--Sobic007G019400 Sobic001G432000--Sobic003G150000 Sobic001G054900 Sobic001G054900 Sobic001G432000--Sobic001G054900 Sobic010G206200 Sobic010G206200 Sobic001G432000--Sobic010G206200 Sobic001G432000--Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic006G156000--Sobic003G443300 Sobic006G156000--Sobic001G432000 Sobic006G156000--Sobic005G168100 Sobic003G219800 Sobic003G219800 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100 Sobic010G154700 Sobic010G154700 Sobic003G155400--Sobic010G154700 Sobic003G155400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic003G155400--Sobic004G310300 Sobic003G072300 Sobic003G072300 Sobic003G155400--Sobic003G072300 Sobic010G018400 Sobic010G018400 Sobic003G155400--Sobic010G018400 Sobic009G119900 Sobic009G119900 Sobic003G155400--Sobic009G119900 Sobic007G051000 Sobic007G051000 Sobic003G155400--Sobic007G051000 Sobic003G155400--Sobic010G204500 Sobic003G155400--Sobic003G215700 Sobic004G259200 Sobic004G259200 Sobic003G209000--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic003G209000--Sobic001G404800 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic006G083500 Sobic006G083500 Sobic003G209000--Sobic006G083500 Sobic003G209000--Sobic003G215700 Sobic003G209000--Sobic007G051000 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic006G013000 Sobic006G013000 Sobic002G296200--Sobic006G013000 Sobic002G296200--Sobic007G134900 Sobic001G074700 Sobic001G074700 Sobic002G296200--Sobic001G074700 Sobic002G296200--Sobic003G215700 Sobic002G309700 Sobic002G309700 Sobic002G296200--Sobic002G309700 Sobic001G134400 Sobic001G134400 Sobic002G296200--Sobic001G134400 Sobic001G047800 Sobic001G047800 Sobic002G296200--Sobic001G047800 Sobic001G286200 Sobic001G286200 Sobic002G296200--Sobic001G286200 Sobic003G129800 Sobic003G129800 Sobic002G296200--Sobic003G129800 Sobic002G418400--Sobic006G083500 Sobic002G418400--Sobic003G215700 Sobic002G418400--Sobic003G209000 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic002G418400--Sobic001G047800 Sobic002G418400--Sobic004G259200 Sobic002G418400--Sobic001G404800 Sobic003G215700--Sobic006G083500 Sobic003G215700--Sobic002G418400 Sobic003G215700--Sobic001G047800 Sobic003G215700--Sobic003G209000 Sobic003G215700--Sobic004G211833 Sobic003G215700--Sobic001G404800 Sobic004G060500 Sobic004G060500 Sobic003G215700--Sobic004G060500 Sobic003G215700--Sobic001G134400 Sobic003G215700--Sobic010G012500 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic003G150000--Sobic010G204500 Sobic003G249700 Sobic003G249700 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800
Octagon: transcription factors


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