Gene annotation
Transcriptome id Sobic.004G259600.1
Synonym Sb04g029800
Functional annotation slowmo homolog, putative, expressed
UniProt C5XZV3
Pfam PF04707
Panther DB PTHR11158 PTHR11158:SF17
NCBI CDD KOG3336; Predicted member of the intramitochondrial sorting protein family
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G13070 : MSF1-like family protein
RAP-DB (Rice) LOC_Os02g48670.1 : slowmo homolog, putative, expressed
MaizeGDB (Corn) Zm00025a032578
Brachypodium KQK01039
Barley HORVU6Hr1G070680.1 , HORVU6Hr1G070680.2
Wheat -
Populus -


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cDNA sequences
Sobic.004G259600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
2 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
3 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
4 Sobic.005G168100 ADP-ribosylation factor, putative, expressed K07950: ADP-ribosylation factor-like protein 5B
5 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
6 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
7 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
8 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
9 Sobic.005G028700 peflin, putative, expressed K13448: calcium-binding protein CML
10 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
11 Sobic.009G222600 expressed protein -
12 Sobic.003G191500 protein transport protein Sec61 subunit beta, putative, expressed K09481: SEC61B, protein transport protein SEC61 subunit beta
13 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
14 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
15 Sobic.004G228700 expressed protein -
16 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
17 Sobic.003G296800 expressed protein -
18 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
19 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
20 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase


Gene co-expression network
sample Sobic004G259600 Sobic004G259600 Sobic004G247200 Sobic004G247200 Sobic004G259600--Sobic004G247200 Sobic002G348100 Sobic002G348100 Sobic004G259600--Sobic002G348100 Sobic003G063200 Sobic003G063200 Sobic004G259600--Sobic003G063200 Sobic005G168100 Sobic005G168100 Sobic004G259600--Sobic005G168100 Sobic001G055600 Sobic001G055600 Sobic004G259600--Sobic001G055600 Sobic009G232900 Sobic009G232900 Sobic004G259600--Sobic009G232900 Sobic002G372400 Sobic002G372400 Sobic004G259600--Sobic002G372400 Sobic010G204600 Sobic010G204600 Sobic004G259600--Sobic010G204600 Sobic005G028700 Sobic005G028700 Sobic004G259600--Sobic005G028700 Sobic004G247200--Sobic003G063200 Sobic004G247200--Sobic005G028700 Sobic004G247200--Sobic004G259600 Sobic004G247200--Sobic001G055600 Sobic004G247200--Sobic010G204600 Sobic004G065500 Sobic004G065500 Sobic004G247200--Sobic004G065500 Sobic009G183300 Sobic009G183300 Sobic004G247200--Sobic009G183300 Sobic001G067601 Sobic001G067601 Sobic004G247200--Sobic001G067601 Sobic004G247200--Sobic002G348100 Sobic002G348100--Sobic002G372400 Sobic001G175300 Sobic001G175300 Sobic002G348100--Sobic001G175300 Sobic003G078200 Sobic003G078200 Sobic002G348100--Sobic003G078200 Sobic002G348100--Sobic001G055600 Sobic009G242300 Sobic009G242300 Sobic002G348100--Sobic009G242300 Sobic006G137800 Sobic006G137800 Sobic002G348100--Sobic006G137800 Sobic009G054800 Sobic009G054800 Sobic002G348100--Sobic009G054800 Sobic004G198400 Sobic004G198400 Sobic002G348100--Sobic004G198400 Sobic004G055100 Sobic004G055100 Sobic002G348100--Sobic004G055100 Sobic003G063200--Sobic005G028700 Sobic003G063200--Sobic010G204600 Sobic003G063200--Sobic004G247200 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic005G168100--Sobic009G232900 Sobic001G432000 Sobic001G432000 Sobic005G168100--Sobic001G432000 Sobic006G156000 Sobic006G156000 Sobic005G168100--Sobic006G156000 Sobic003G155400 Sobic003G155400 Sobic005G168100--Sobic003G155400 Sobic003G209000 Sobic003G209000 Sobic005G168100--Sobic003G209000 Sobic002G296200 Sobic002G296200 Sobic005G168100--Sobic002G296200 Sobic002G418400 Sobic002G418400 Sobic005G168100--Sobic002G418400 Sobic003G215700 Sobic003G215700 Sobic005G168100--Sobic003G215700 Sobic003G150000 Sobic003G150000 Sobic005G168100--Sobic003G150000 Sobic001G055600--Sobic001G390300 Sobic007G074000 Sobic007G074000 Sobic001G055600--Sobic007G074000 Sobic001G055600--Sobic002G407900 Sobic009G159400 Sobic009G159400 Sobic001G055600--Sobic009G159400 Sobic001G481100 Sobic001G481100 Sobic001G055600--Sobic001G481100 Sobic001G055600--Sobic004G065500 Sobic002G336600 Sobic002G336600 Sobic001G055600--Sobic002G336600 Sobic003G228900 Sobic003G228900 Sobic001G055600--Sobic003G228900 Sobic009G247900 Sobic009G247900 Sobic001G055600--Sobic009G247900 Sobic009G232900--Sobic005G168100 Sobic009G232900--Sobic001G432000 Sobic009G232900--Sobic003G150000 Sobic010G204500 Sobic010G204500 Sobic009G232900--Sobic010G204500 Sobic009G232900--Sobic002G296200 Sobic007G134900 Sobic007G134900 Sobic009G232900--Sobic007G134900 Sobic009G232900--Sobic003G063200 Sobic010G251600 Sobic010G251600 Sobic009G232900--Sobic010G251600 Sobic001G128400 Sobic001G128400 Sobic009G232900--Sobic001G128400 Sobic002G372400--Sobic003G078200 Sobic002G372400--Sobic009G054800 Sobic010G076400 Sobic010G076400 Sobic002G372400--Sobic010G076400 Sobic010G230700 Sobic010G230700 Sobic002G372400--Sobic010G230700 Sobic007G018300 Sobic007G018300 Sobic002G372400--Sobic007G018300 Sobic005G019700 Sobic005G019700 Sobic002G372400--Sobic005G019700 Sobic009G223300 Sobic009G223300 Sobic002G372400--Sobic009G223300 Sobic009G050300 Sobic009G050300 Sobic002G372400--Sobic009G050300 Sobic002G372400--Sobic004G198400 Sobic001G095300 Sobic001G095300 Sobic010G204600--Sobic001G095300 Sobic010G204600--Sobic003G063200 Sobic002G405600 Sobic002G405600 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic010G204600--Sobic009G023200 Sobic009G129000 Sobic009G129000 Sobic010G204600--Sobic009G129000 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic009G033700 Sobic009G033700 Sobic010G204600--Sobic009G033700 Sobic005G028700--Sobic003G063200 Sobic005G028700--Sobic009G129000 Sobic010G086200 Sobic010G086200 Sobic005G028700--Sobic010G086200 Sobic005G028700--Sobic004G065500 Sobic005G028700--Sobic004G247200 Sobic007G151100 Sobic007G151100 Sobic005G028700--Sobic007G151100 Sobic002G356101 Sobic002G356101 Sobic005G028700--Sobic002G356101 Sobic001G477300 Sobic001G477300 Sobic005G028700--Sobic001G477300 Sobic005G028700--Sobic004G306300
Octagon: transcription factors


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