Gene annotation
Transcriptome id Sobic.009G216800.1
Synonym Sb09g027190, FPS1
Functional annotation polyprenyl synthetase, putative, expressed
UniProt C5YUX0
Pfam PF00348
Panther DB PTHR11525 PTHR11525:SF5
NCBI CDD KOG0711; Polyprenyl synthetase
KEGG Orthology K00787; farnesyl diphosphate synthase
Gene Ontology GO:0008299; isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G47770 : farnesyl diphosphate synthase 1
RAP-DB (Rice) LOC_Os01g50760.1 : polyprenyl synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a038917 , Zm00025a036487
Brachypodium KQK05101
Barley HORVU3Hr1G065960.7 , HORVU3Hr1G065960.5 , HORVU3Hr1G065960.4 , HORVU3Hr1G065960.3 , HORVU3Hr1G065960.2 , HORVU3Hr1G065960.8 , HORVU1Hr1G079070.8 , HORVU1Hr1G079070.9 , HORVU1Hr1G079070.6 , HORVU1Hr1G079070.7 , HORVU1Hr1G079070.4 , HORVU1Hr1G079070.5 , HORVU1Hr1G079070.2 , HORVU1Hr1G079070.3 , HORVU1Hr1G079070.1 , HORVU1Hr1G079070.10 , HORVU1Hr1G079070.11 , HORVU1Hr1G079070.12 , HORVU1Hr1G079070.13 , HORVU6Hr1G033960.1 , HORVU2Hr1G073510.1
Wheat TraesCS3D02G255200 , TraesCS3A02G254300 , TraesCS1A02G365800 , TraesCS1D02G371200 , TraesCS1D02G371200 , TraesCS3B02G286300 , TraesCS3B02G286300 , TraesCS1B02G383400
Populus -


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cDNA sequences
Sobic.009G216800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
2 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
3 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
4 Sobic.002G251900 chaperone protein dnaJ 10, putative, expressed -
5 Sobic.008G186600 ergosterol biosynthetic protein 28, putative, expressed -
6 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
7 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
8 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
9 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
10 Sobic.005G080900 expressed protein -
11 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
12 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
13 Sobic.006G159600 cytochrome b561, putative, expressed K08360: cytochrome b-561
14 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
15 Sobic.002G393400 chaperonin, putative, expressed K04078: groES, chaperonin GroES
16 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
17 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
18 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
19 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
20 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -


Gene co-expression network
sample Sobic009G216800 Sobic009G216800 Sobic002G372400 Sobic002G372400 Sobic009G216800--Sobic002G372400 Sobic002G348100 Sobic002G348100 Sobic009G216800--Sobic002G348100 Sobic003G078200 Sobic003G078200 Sobic009G216800--Sobic003G078200 Sobic002G251900 Sobic002G251900 Sobic009G216800--Sobic002G251900 Sobic008G186600 Sobic008G186600 Sobic009G216800--Sobic008G186600 Sobic004G055700 Sobic004G055700 Sobic009G216800--Sobic004G055700 Sobic006G136800 Sobic006G136800 Sobic009G216800--Sobic006G136800 Sobic001G403500 Sobic001G403500 Sobic009G216800--Sobic001G403500 Sobic003G109600 Sobic003G109600 Sobic009G216800--Sobic003G109600 Sobic002G372400--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic002G372400--Sobic009G054800 Sobic010G076400 Sobic010G076400 Sobic002G372400--Sobic010G076400 Sobic010G230700 Sobic010G230700 Sobic002G372400--Sobic010G230700 Sobic007G018300 Sobic007G018300 Sobic002G372400--Sobic007G018300 Sobic005G019700 Sobic005G019700 Sobic002G372400--Sobic005G019700 Sobic009G223300 Sobic009G223300 Sobic002G372400--Sobic009G223300 Sobic009G050300 Sobic009G050300 Sobic002G372400--Sobic009G050300 Sobic004G198400 Sobic004G198400 Sobic002G372400--Sobic004G198400 Sobic002G348100--Sobic002G372400 Sobic001G175300 Sobic001G175300 Sobic002G348100--Sobic001G175300 Sobic002G348100--Sobic003G078200 Sobic001G055600 Sobic001G055600 Sobic002G348100--Sobic001G055600 Sobic009G242300 Sobic009G242300 Sobic002G348100--Sobic009G242300 Sobic006G137800 Sobic006G137800 Sobic002G348100--Sobic006G137800 Sobic002G348100--Sobic009G054800 Sobic002G348100--Sobic004G198400 Sobic004G055100 Sobic004G055100 Sobic002G348100--Sobic004G055100 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic010G206200 Sobic010G206200 Sobic003G078200--Sobic010G206200 Sobic003G078200--Sobic005G019700 Sobic007G197800 Sobic007G197800 Sobic003G078200--Sobic007G197800 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic003G078200--Sobic006G116700 Sobic002G393400 Sobic002G393400 Sobic002G251900--Sobic002G393400 Sobic003G393900 Sobic003G393900 Sobic002G251900--Sobic003G393900 Sobic009G181800 Sobic009G181800 Sobic002G251900--Sobic009G181800 Sobic002G387900 Sobic002G387900 Sobic002G251900--Sobic002G387900 Sobic005G011300 Sobic005G011300 Sobic002G251900--Sobic005G011300 Sobic001G459800 Sobic001G459800 Sobic002G251900--Sobic001G459800 Sobic004G306300 Sobic004G306300 Sobic002G251900--Sobic004G306300 Sobic010G204500 Sobic010G204500 Sobic002G251900--Sobic010G204500 Sobic004G171400 Sobic004G171400 Sobic002G251900--Sobic004G171400 Sobic009G115700 Sobic009G115700 Sobic008G186600--Sobic009G115700 Sobic009G232900 Sobic009G232900 Sobic008G186600--Sobic009G232900 Sobic007G134900 Sobic007G134900 Sobic008G186600--Sobic007G134900 Sobic008G186600--Sobic009G216800 Sobic002G415500 Sobic002G415500 Sobic008G186600--Sobic002G415500 Sobic002G296200 Sobic002G296200 Sobic008G186600--Sobic002G296200 Sobic006G013000 Sobic006G013000 Sobic008G186600--Sobic006G013000 Sobic008G186600--Sobic003G109600 Sobic007G161700 Sobic007G161700 Sobic008G186600--Sobic007G161700 Sobic005G113300 Sobic005G113300 Sobic004G055700--Sobic005G113300 Sobic003G160700 Sobic003G160700 Sobic004G055700--Sobic003G160700 Sobic001G361600 Sobic001G361600 Sobic004G055700--Sobic001G361600 Sobic009G188000 Sobic009G188000 Sobic004G055700--Sobic009G188000 Sobic002G090300 Sobic002G090300 Sobic004G055700--Sobic002G090300 Sobic002G418400 Sobic002G418400 Sobic004G055700--Sobic002G418400 Sobic010G028200 Sobic010G028200 Sobic004G055700--Sobic010G028200 Sobic004G042000 Sobic004G042000 Sobic004G055700--Sobic004G042000 Sobic004G220000 Sobic004G220000 Sobic004G055700--Sobic004G220000 Sobic004G046200 Sobic004G046200 Sobic006G136800--Sobic004G046200 Sobic002G081600 Sobic002G081600 Sobic006G136800--Sobic002G081600 Sobic003G436700 Sobic003G436700 Sobic006G136800--Sobic003G436700 Sobic001G295200 Sobic001G295200 Sobic006G136800--Sobic001G295200 Sobic001G036900 Sobic001G036900 Sobic006G136800--Sobic001G036900 Sobic004G205100 Sobic004G205100 Sobic006G136800--Sobic004G205100 Sobic004G340900 Sobic004G340900 Sobic006G136800--Sobic004G340900 Sobic001G389000 Sobic001G389000 Sobic006G136800--Sobic001G389000 Sobic001G500000 Sobic001G500000 Sobic006G136800--Sobic001G500000 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic009G215200 Sobic009G215200 Sobic001G403500--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic001G403500--Sobic002G379500 Sobic001G403500--Sobic007G197800 Sobic001G403500--Sobic002G081600 Sobic006G137100 Sobic006G137100 Sobic001G403500--Sobic006G137100 Sobic001G403500--Sobic006G116700 Sobic001G403500--Sobic010G206200 Sobic003G109600--Sobic002G379500 Sobic003G109600--Sobic009G223300 Sobic003G109600--Sobic001G403500 Sobic001G039400 Sobic001G039400 Sobic003G109600--Sobic001G039400 Sobic003G249700 Sobic003G249700 Sobic003G109600--Sobic003G249700 Sobic002G056200 Sobic002G056200 Sobic003G109600--Sobic002G056200 Sobic002G047600 Sobic002G047600 Sobic003G109600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic003G109600--Sobic007G019400 Sobic003G109600--Sobic003G436700
Octagon: transcription factors


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