Gene annotation
Transcriptome id Sobic.002G348100.1
Synonym RPS13, ATRPS13A, Sb02g037080, RPS13A, PFL2
Functional annotation 40S ribosomal protein S13, putative, expressed
UniProt C5XCB5
Pfam PF00312 PF08069
Panther DB PTHR11885 PTHR11885:SF8
NCBI CDD KOG0400; 40S ribosomal protein S13
KEGG Orthology K02953; RP-S13e, small subunit ribosomal protein S13e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G00100 : ribosomal protein S13A
RAP-DB (Rice) LOC_Os07g38540.1 : 40S ribosomal protein S13, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK15614
Barley HORVU2Hr1G037940.2 , HORVU2Hr1G037940.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
2 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
3 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
4 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
5 Sobic.009G242300 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
6 Sobic.006G137800 expressed protein -
7 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
8 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
9 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
10 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
11 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
12 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
13 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
14 Sobic.004G259600 slowmo homolog, putative, expressed -
15 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
16 Sobic.002G414700 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
17 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
18 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
19 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
20 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e


Gene co-expression network
sample Sobic002G348100 Sobic002G348100 Sobic002G372400 Sobic002G372400 Sobic002G348100--Sobic002G372400 Sobic001G175300 Sobic001G175300 Sobic002G348100--Sobic001G175300 Sobic003G078200 Sobic003G078200 Sobic002G348100--Sobic003G078200 Sobic001G055600 Sobic001G055600 Sobic002G348100--Sobic001G055600 Sobic009G242300 Sobic009G242300 Sobic002G348100--Sobic009G242300 Sobic006G137800 Sobic006G137800 Sobic002G348100--Sobic006G137800 Sobic009G054800 Sobic009G054800 Sobic002G348100--Sobic009G054800 Sobic004G198400 Sobic004G198400 Sobic002G348100--Sobic004G198400 Sobic004G055100 Sobic004G055100 Sobic002G348100--Sobic004G055100 Sobic002G372400--Sobic003G078200 Sobic002G372400--Sobic009G054800 Sobic010G076400 Sobic010G076400 Sobic002G372400--Sobic010G076400 Sobic010G230700 Sobic010G230700 Sobic002G372400--Sobic010G230700 Sobic007G018300 Sobic007G018300 Sobic002G372400--Sobic007G018300 Sobic005G019700 Sobic005G019700 Sobic002G372400--Sobic005G019700 Sobic009G223300 Sobic009G223300 Sobic002G372400--Sobic009G223300 Sobic009G050300 Sobic009G050300 Sobic002G372400--Sobic009G050300 Sobic002G372400--Sobic004G198400 Sobic010G206200 Sobic010G206200 Sobic001G175300--Sobic010G206200 Sobic001G403500 Sobic001G403500 Sobic001G175300--Sobic001G403500 Sobic001G175300--Sobic004G198400 Sobic001G175300--Sobic009G050300 Sobic001G175300--Sobic003G078200 Sobic001G175300--Sobic009G054800 Sobic002G286900 Sobic002G286900 Sobic001G175300--Sobic002G286900 Sobic001G175300--Sobic009G242300 Sobic001G175300--Sobic002G372400 Sobic003G078200--Sobic002G372400 Sobic003G078200--Sobic009G054800 Sobic003G078200--Sobic010G206200 Sobic003G078200--Sobic005G019700 Sobic007G197800 Sobic007G197800 Sobic003G078200--Sobic007G197800 Sobic003G078200--Sobic007G018300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic003G078200--Sobic006G116700 Sobic001G390300 Sobic001G390300 Sobic001G055600--Sobic001G390300 Sobic007G074000 Sobic007G074000 Sobic001G055600--Sobic007G074000 Sobic002G407900 Sobic002G407900 Sobic001G055600--Sobic002G407900 Sobic009G159400 Sobic009G159400 Sobic001G055600--Sobic009G159400 Sobic001G481100 Sobic001G481100 Sobic001G055600--Sobic001G481100 Sobic004G065500 Sobic004G065500 Sobic001G055600--Sobic004G065500 Sobic002G336600 Sobic002G336600 Sobic001G055600--Sobic002G336600 Sobic003G228900 Sobic003G228900 Sobic001G055600--Sobic003G228900 Sobic009G247900 Sobic009G247900 Sobic001G055600--Sobic009G247900 Sobic009G242300--Sobic001G175300 Sobic009G242300--Sobic007G197800 Sobic006G067800 Sobic006G067800 Sobic009G242300--Sobic006G067800 Sobic009G242300--Sobic009G050300 Sobic004G008400 Sobic004G008400 Sobic009G242300--Sobic004G008400 Sobic002G379500 Sobic002G379500 Sobic009G242300--Sobic002G379500 Sobic009G242300--Sobic001G018900 Sobic001G402050 Sobic001G402050 Sobic009G242300--Sobic001G402050 Sobic009G242300--Sobic002G286900 Sobic006G137800--Sobic009G159400 Sobic008G025600 Sobic008G025600 Sobic006G137800--Sobic008G025600 Sobic004G321300 Sobic004G321300 Sobic006G137800--Sobic004G321300 Sobic001G140900 Sobic001G140900 Sobic006G137800--Sobic001G140900 Sobic002G200600 Sobic002G200600 Sobic006G137800--Sobic002G200600 Sobic001G038900 Sobic001G038900 Sobic006G137800--Sobic001G038900 Sobic008G050600 Sobic008G050600 Sobic006G137800--Sobic008G050600 Sobic006G159600 Sobic006G159600 Sobic006G137800--Sobic006G159600 Sobic003G345100 Sobic003G345100 Sobic006G137800--Sobic003G345100 Sobic009G054800--Sobic003G078200 Sobic009G054800--Sobic010G206200 Sobic009G054800--Sobic002G372400 Sobic009G054800--Sobic005G019700 Sobic009G054800--Sobic007G197800 Sobic009G054800--Sobic010G230700 Sobic009G054800--Sobic009G050300 Sobic009G054800--Sobic004G198400 Sobic009G054800--Sobic006G116700 Sobic004G198400--Sobic001G403500 Sobic004G198400--Sobic002G379500 Sobic004G198400--Sobic009G050300 Sobic004G198400--Sobic010G206200 Sobic004G280700 Sobic004G280700 Sobic004G198400--Sobic004G280700 Sobic006G213000 Sobic006G213000 Sobic004G198400--Sobic006G213000 Sobic004G198400--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic004G198400--Sobic006G221200 Sobic006G137100 Sobic006G137100 Sobic004G198400--Sobic006G137100 Sobic010G070500 Sobic010G070500 Sobic004G055100--Sobic010G070500 Sobic004G055100--Sobic003G078200 Sobic010G251600 Sobic010G251600 Sobic004G055100--Sobic010G251600 Sobic004G055100--Sobic009G054800 Sobic004G055100--Sobic010G206200 Sobic002G414700 Sobic002G414700 Sobic004G055100--Sobic002G414700 Sobic003G436700 Sobic003G436700 Sobic004G055100--Sobic003G436700 Sobic001G226500 Sobic001G226500 Sobic004G055100--Sobic001G226500 Sobic004G055100--Sobic001G175300
Octagon: transcription factors


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