Gene annotation
Transcriptome id Sobic.004G055700.2,Sobic.004G055700.1
Synonym GDCH, Sb04g004720
Functional annotation - (PubMedID : 26976818)
glycine cleavage system H protein, putative, expressed
UniProt C5XW40
Pfam PF01597
Panther DB PTHR11715 PTHR11715:SF9
NCBI CDD KOG3373; Glycine cleavage system H protein (lipoate-binding)
KEGG Orthology K02437; gcvH, glycine cleavage system H protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35120 : Single hybrid motif superfamily protein
RAP-DB (Rice) LOC_Os02g07410.1 : glycine cleavage system H protein, putative, expressed
MaizeGDB (Corn) Zm00025a034797 , Zm00025a019078
Brachypodium KQJ93538
Barley -
Wheat TraesCS6D02G147700 , TraesCS6B02G186400 , TraesCS6A02G163500
Populus -


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cDNA sequences
Sobic.004G055700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
2 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
3 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
4 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
5 Sobic.002G090300 cytidine deaminase, putative, expressed -
6 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
7 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
8 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
9 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
10 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
11 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.004G310200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@receptor-like protein kinase like protein, putative, expressed -
13 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
14 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
15 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -
16 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
17 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
18 Sobic.010G184800 heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
19 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.001G313600 heavy metal-associated domain containing protein, expressed -


Gene co-expression network
sample Sobic004G055700 Sobic004G055700 Sobic005G113300 Sobic005G113300 Sobic004G055700--Sobic005G113300 Sobic003G160700 Sobic003G160700 Sobic004G055700--Sobic003G160700 Sobic001G361600 Sobic001G361600 Sobic004G055700--Sobic001G361600 Sobic009G188000 Sobic009G188000 Sobic004G055700--Sobic009G188000 Sobic002G090300 Sobic002G090300 Sobic004G055700--Sobic002G090300 Sobic002G418400 Sobic002G418400 Sobic004G055700--Sobic002G418400 Sobic010G028200 Sobic010G028200 Sobic004G055700--Sobic010G028200 Sobic004G042000 Sobic004G042000 Sobic004G055700--Sobic004G042000 Sobic004G220000 Sobic004G220000 Sobic004G055700--Sobic004G220000 Sobic005G113300--Sobic004G220000 Sobic001G295200 Sobic001G295200 Sobic005G113300--Sobic001G295200 Sobic005G113300--Sobic001G361600 Sobic006G116700 Sobic006G116700 Sobic005G113300--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic005G113300--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic005G113300--Sobic003G160700 Sobic003G160700--Sobic005G113300 Sobic004G041900 Sobic004G041900 Sobic003G160700--Sobic004G041900 Sobic003G125650 Sobic003G125650 Sobic003G160700--Sobic003G125650 Sobic003G078200 Sobic003G078200 Sobic003G160700--Sobic003G078200 Sobic001G475500 Sobic001G475500 Sobic003G160700--Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic003G160700--Sobic001G502900 Sobic003G160700--Sobic004G220000 Sobic003G160700--Sobic009G188000 Sobic003G436700 Sobic003G436700 Sobic003G160700--Sobic003G436700 Sobic001G361600--Sobic001G295200 Sobic001G361600--Sobic005G113300 Sobic001G361600--Sobic006G116700 Sobic001G361600--Sobic001G018900 Sobic001G361600--Sobic004G220000 Sobic001G361600--Sobic003G078200 Sobic006G141700 Sobic006G141700 Sobic001G361600--Sobic006G141700 Sobic001G361600--Sobic009G188000 Sobic003G408100 Sobic003G408100 Sobic001G361600--Sobic003G408100 Sobic001G313600 Sobic001G313600 Sobic009G188000--Sobic001G313600 Sobic001G304100 Sobic001G304100 Sobic009G188000--Sobic001G304100 Sobic005G107900 Sobic005G107900 Sobic009G188000--Sobic005G107900 Sobic001G502400 Sobic001G502400 Sobic009G188000--Sobic001G502400 Sobic001G238400 Sobic001G238400 Sobic009G188000--Sobic001G238400 Sobic006G235100 Sobic006G235100 Sobic009G188000--Sobic006G235100 Sobic003G084400 Sobic003G084400 Sobic009G188000--Sobic003G084400 Sobic008G009400 Sobic008G009400 Sobic009G188000--Sobic008G009400 Sobic009G188000--Sobic001G295200 Sobic002G090300--Sobic004G055700 Sobic002G090300--Sobic004G042000 Sobic003G152200 Sobic003G152200 Sobic002G090300--Sobic003G152200 Sobic006G197100 Sobic006G197100 Sobic002G090300--Sobic006G197100 Sobic004G239500 Sobic004G239500 Sobic002G090300--Sobic004G239500 Sobic002G003800 Sobic002G003800 Sobic002G090300--Sobic002G003800 Sobic002G001700 Sobic002G001700 Sobic002G090300--Sobic002G001700 Sobic004G024100 Sobic004G024100 Sobic002G090300--Sobic004G024100 Sobic001G264000 Sobic001G264000 Sobic002G090300--Sobic001G264000 Sobic006G083500 Sobic006G083500 Sobic002G418400--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic002G418400--Sobic003G215700 Sobic003G209000 Sobic003G209000 Sobic002G418400--Sobic003G209000 Sobic002G398901 Sobic002G398901 Sobic002G418400--Sobic002G398901 Sobic004G211833 Sobic004G211833 Sobic002G418400--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic002G418400--Sobic010G012500 Sobic001G047800 Sobic001G047800 Sobic002G418400--Sobic001G047800 Sobic004G259200 Sobic004G259200 Sobic002G418400--Sobic004G259200 Sobic001G404800 Sobic001G404800 Sobic002G418400--Sobic001G404800 Sobic010G028200--Sobic003G209000 Sobic010G065900 Sobic010G065900 Sobic010G028200--Sobic010G065900 Sobic010G028200--Sobic002G418400 Sobic010G028200--Sobic001G404800 Sobic010G028200--Sobic003G436700 Sobic010G028200--Sobic004G055700 Sobic010G028200--Sobic003G160700 Sobic004G008400 Sobic004G008400 Sobic010G028200--Sobic004G008400 Sobic002G136700 Sobic002G136700 Sobic010G028200--Sobic002G136700 Sobic004G042000--Sobic006G197100 Sobic004G042000--Sobic002G003800 Sobic004G349125 Sobic004G349125 Sobic004G042000--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic004G042000--Sobic001G416200 Sobic002G213600 Sobic002G213600 Sobic004G042000--Sobic002G213600 Sobic001G302600 Sobic001G302600 Sobic004G042000--Sobic001G302600 Sobic003G311800 Sobic003G311800 Sobic004G042000--Sobic003G311800 Sobic001G304201 Sobic001G304201 Sobic004G042000--Sobic001G304201 Sobic004G042000--Sobic001G264000 Sobic004G220000--Sobic005G113300 Sobic004G220000--Sobic004G211833 Sobic004G220000--Sobic010G012500 Sobic004G220000--Sobic002G398901 Sobic004G220000--Sobic001G295200 Sobic004G220000--Sobic006G083500 Sobic004G220000--Sobic009G188000 Sobic004G220000--Sobic001G361600 Sobic001G130301 Sobic001G130301 Sobic004G220000--Sobic001G130301
Octagon: transcription factors


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