Gene annotation
Transcriptome id Sobic.001G475500.1
Synonym Sb01g044550, RABA4a, AtRABA4a
Functional annotation ras-related protein, putative, expressed
UniProt C5WUT9
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF350
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G65270 : RAB GTPase homolog A4A
RAP-DB (Rice) LOC_Os10g23100.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a047731 , Zm00025a036613 , Zm00025a001034 , Zm00025a005207 , Zm00025a018479 , Zm00025a017900 , Zm00025a044575 , Zm00025a013755 , Zm00025a053218
Brachypodium KQJ96486 , KQK04867 , KQK17534 , KQJ89680 , PNT64397
Barley HORVU7Hr1G052840.4 , HORVU7Hr1G052840.2 , HORVU7Hr1G052840.3 , HORVU7Hr1G052840.1 , HORVU1Hr1G034400.1 , HORVU1Hr1G034400.3 , HORVU1Hr1G034400.4 , HORVU1Hr1G034400.5 , HORVU1Hr1G034400.6 , HORVU1Hr1G034400.7 , HORVU1Hr1G034400.8 , HORVU5Hr1G080990.1 , HORVU5Hr1G080990.3 , HORVU5Hr1G080990.2
Wheat TraesCS1B02G152100 , TraesCS1D02G136900 , TraesCS1A02G015400 , TraesCS1D02G405900 , TraesCS5B02G171900 , TraesCS5D02G321800 , TraesCS7D02G254400 , TraesCS7A02G256000 , TraesCS1A02G398400 , TraesCS5D02G179100 , TraesCS1B02G426300 , TraesCS5B02G316300 , TraesCS7B02G152600 , TraesCS5A02G176000 , TraesCS5A02G315700 , TraesCS1A02G131500 , TraesCS1A02G131500
Populus -


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cDNA sequences
Sobic.001G475500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G502900 nicotiana lesion-inducing like, putative, expressed -
2 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
3 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
4 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
5 Sobic.007G150800 expressed protein -
6 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
7 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
8 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase
9 Sobic.003G117500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
10 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
11 Sobic.004G345500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
13 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
14 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
15 Sobic.002G128800 fiber protein Fb34, putative, expressed -
16 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
17 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
18 Sobic.001G481000 expressed protein -
19 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e


Gene co-expression network
sample Sobic001G475500 Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic001G475500--Sobic001G502900 Sobic003G160700 Sobic003G160700 Sobic001G475500--Sobic003G160700 Sobic003G122200 Sobic003G122200 Sobic001G475500--Sobic003G122200 Sobic005G113300 Sobic005G113300 Sobic001G475500--Sobic005G113300 Sobic007G150800 Sobic007G150800 Sobic001G475500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic003G117500 Sobic003G117500 Sobic001G475500--Sobic003G117500 Sobic001G502900--Sobic001G475500 Sobic001G502900--Sobic003G160700 Sobic001G502900--Sobic005G113300 Sobic003G078200 Sobic003G078200 Sobic001G502900--Sobic003G078200 Sobic001G018900 Sobic001G018900 Sobic001G502900--Sobic001G018900 Sobic001G502900--Sobic004G220000 Sobic003G125650 Sobic003G125650 Sobic001G502900--Sobic003G125650 Sobic005G019700 Sobic005G019700 Sobic001G502900--Sobic005G019700 Sobic004G345500 Sobic004G345500 Sobic001G502900--Sobic004G345500 Sobic003G160700--Sobic005G113300 Sobic004G041900 Sobic004G041900 Sobic003G160700--Sobic004G041900 Sobic003G160700--Sobic003G125650 Sobic003G160700--Sobic003G078200 Sobic003G160700--Sobic001G475500 Sobic003G160700--Sobic001G502900 Sobic003G160700--Sobic004G220000 Sobic009G188000 Sobic009G188000 Sobic003G160700--Sobic009G188000 Sobic003G436700 Sobic003G436700 Sobic003G160700--Sobic003G436700 Sobic003G122200--Sobic001G475500 Sobic001G418100 Sobic001G418100 Sobic003G122200--Sobic001G418100 Sobic003G122200--Sobic007G150800 Sobic005G112800 Sobic005G112800 Sobic003G122200--Sobic005G112800 Sobic003G034600 Sobic003G034600 Sobic003G122200--Sobic003G034600 Sobic010G264300 Sobic010G264300 Sobic003G122200--Sobic010G264300 Sobic001G038300 Sobic001G038300 Sobic003G122200--Sobic001G038300 Sobic004G055700 Sobic004G055700 Sobic003G122200--Sobic004G055700 Sobic001G040100 Sobic001G040100 Sobic003G122200--Sobic001G040100 Sobic005G113300--Sobic004G220000 Sobic001G295200 Sobic001G295200 Sobic005G113300--Sobic001G295200 Sobic005G113300--Sobic001G361600 Sobic006G116700 Sobic006G116700 Sobic005G113300--Sobic006G116700 Sobic005G113300--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic005G113300--Sobic003G160700 Sobic007G150800--Sobic001G475500 Sobic002G128800 Sobic002G128800 Sobic007G150800--Sobic002G128800 Sobic010G070500 Sobic010G070500 Sobic007G150800--Sobic010G070500 Sobic006G278100 Sobic006G278100 Sobic007G150800--Sobic006G278100 Sobic009G212200 Sobic009G212200 Sobic007G150800--Sobic009G212200 Sobic001G444800 Sobic001G444800 Sobic007G150800--Sobic001G444800 Sobic007G150800--Sobic003G122200 Sobic007G150800--Sobic009G173500 Sobic003G011100 Sobic003G011100 Sobic007G150800--Sobic003G011100 Sobic001G039400 Sobic001G039400 Sobic009G173500--Sobic001G039400 Sobic001G226500 Sobic001G226500 Sobic009G173500--Sobic001G226500 Sobic009G233400 Sobic009G233400 Sobic009G173500--Sobic009G233400 Sobic009G223300 Sobic009G223300 Sobic009G173500--Sobic009G223300 Sobic003G109600 Sobic003G109600 Sobic009G173500--Sobic003G109600 Sobic009G173500--Sobic003G078200 Sobic003G249700 Sobic003G249700 Sobic009G173500--Sobic003G249700 Sobic009G179100 Sobic009G179100 Sobic009G173500--Sobic009G179100 Sobic009G173500--Sobic010G070500 Sobic001G361600--Sobic001G295200 Sobic001G361600--Sobic005G113300 Sobic001G361600--Sobic006G116700 Sobic001G361600--Sobic001G018900 Sobic001G361600--Sobic004G220000 Sobic001G361600--Sobic003G078200 Sobic006G141700 Sobic006G141700 Sobic001G361600--Sobic006G141700 Sobic001G361600--Sobic009G188000 Sobic003G408100 Sobic003G408100 Sobic001G361600--Sobic003G408100 Sobic004G220000--Sobic005G113300 Sobic004G211833 Sobic004G211833 Sobic004G220000--Sobic004G211833 Sobic010G012500 Sobic010G012500 Sobic004G220000--Sobic010G012500 Sobic002G398901 Sobic002G398901 Sobic004G220000--Sobic002G398901 Sobic004G220000--Sobic001G295200 Sobic006G083500 Sobic006G083500 Sobic004G220000--Sobic006G083500 Sobic004G220000--Sobic009G188000 Sobic004G220000--Sobic001G361600 Sobic001G130301 Sobic001G130301 Sobic004G220000--Sobic001G130301 Sobic003G117500--Sobic001G475500 Sobic003G027400 Sobic003G027400 Sobic003G117500--Sobic003G027400 Sobic001G481000 Sobic001G481000 Sobic003G117500--Sobic001G481000 Sobic001G310300 Sobic001G310300 Sobic003G117500--Sobic001G310300 Sobic003G117500--Sobic007G150800 Sobic001G434300 Sobic001G434300 Sobic003G117500--Sobic001G434300 Sobic003G219800 Sobic003G219800 Sobic003G117500--Sobic003G219800 Sobic002G350500 Sobic002G350500 Sobic003G117500--Sobic002G350500 Sobic003G117500--Sobic001G502900
Octagon: transcription factors


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