Gene annotation
Transcriptome id Sobic.002G090300.1
Synonym Sb02g007465
Functional annotation cytidine deaminase, putative, expressed
UniProt A0A1B6QA16
Pfam PF00383
Panther DB PTHR11079 PTHR11079:SF90
NCBI CDD KOG1018; Cytosine deaminase FCY1 and related enzymes
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G28050 : Cytidine/deoxycytidylate deaminase family protein
RAP-DB (Rice) LOC_Os03g61810.1 : tRNA-specific adenosine deaminase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G055700 -(PubMedID : 26976818)@glycine cleavage system H protein, putative, expressed K02437: gcvH, glycine cleavage system H protein
2 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
3 Sobic.003G152200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.006G197100 DNA binding protein, putative, expressed -
5 Sobic.004G239500 RING-H2 finger protein ATL1Q, putative, expressed -
6 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.002G001700 ZOS7-01 - C2H2 zinc finger protein, expressed -
8 Sobic.004G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
9 Sobic.001G264000 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
10 Sobic.002G418400 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed -
11 Sobic.006G256900 dirigent-like protein pDIR17, putative, expressed -
12 Sobic.009G111400 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
13 Sobic.001G430100 - -
14 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
15 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
16 Sobic.005G215400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
17 Sobic.001G147900 cytochrome P450, putative, expressed -
18 Sobic.003G218400 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
19 Sobic.007G204700 expressed protein -
20 Sobic.001G395800 SMP-30/Gluconolaconase/LRE domain protein, putative, expressed -


Gene co-expression network
sample Sobic002G090300 Sobic002G090300 Sobic004G055700 Sobic004G055700 Sobic002G090300--Sobic004G055700 Sobic004G042000 Sobic004G042000 Sobic002G090300--Sobic004G042000 Sobic003G152200 Sobic003G152200 Sobic002G090300--Sobic003G152200 Sobic006G197100 Sobic006G197100 Sobic002G090300--Sobic006G197100 Sobic004G239500 Sobic004G239500 Sobic002G090300--Sobic004G239500 Sobic002G003800 Sobic002G003800 Sobic002G090300--Sobic002G003800 Sobic002G001700 Sobic002G001700 Sobic002G090300--Sobic002G001700 Sobic004G024100 Sobic004G024100 Sobic002G090300--Sobic004G024100 Sobic001G264000 Sobic001G264000 Sobic002G090300--Sobic001G264000 Sobic005G113300 Sobic005G113300 Sobic004G055700--Sobic005G113300 Sobic003G160700 Sobic003G160700 Sobic004G055700--Sobic003G160700 Sobic001G361600 Sobic001G361600 Sobic004G055700--Sobic001G361600 Sobic009G188000 Sobic009G188000 Sobic004G055700--Sobic009G188000 Sobic004G055700--Sobic002G090300 Sobic002G418400 Sobic002G418400 Sobic004G055700--Sobic002G418400 Sobic010G028200 Sobic010G028200 Sobic004G055700--Sobic010G028200 Sobic004G055700--Sobic004G042000 Sobic004G220000 Sobic004G220000 Sobic004G055700--Sobic004G220000 Sobic004G042000--Sobic006G197100 Sobic004G042000--Sobic002G003800 Sobic004G349125 Sobic004G349125 Sobic004G042000--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic004G042000--Sobic001G416200 Sobic002G213600 Sobic002G213600 Sobic004G042000--Sobic002G213600 Sobic001G302600 Sobic001G302600 Sobic004G042000--Sobic001G302600 Sobic003G311800 Sobic003G311800 Sobic004G042000--Sobic003G311800 Sobic001G304201 Sobic001G304201 Sobic004G042000--Sobic001G304201 Sobic004G042000--Sobic001G264000 Sobic006G256900 Sobic006G256900 Sobic003G152200--Sobic006G256900 Sobic001G147900 Sobic001G147900 Sobic003G152200--Sobic001G147900 Sobic002G042200 Sobic002G042200 Sobic003G152200--Sobic002G042200 Sobic003G152200--Sobic004G024100 Sobic005G065900 Sobic005G065900 Sobic003G152200--Sobic005G065900 Sobic003G404600 Sobic003G404600 Sobic003G152200--Sobic003G404600 Sobic003G015300 Sobic003G015300 Sobic003G152200--Sobic003G015300 Sobic003G368600 Sobic003G368600 Sobic003G152200--Sobic003G368600 Sobic006G243600 Sobic006G243600 Sobic003G152200--Sobic006G243600 Sobic006G197100--Sobic002G003800 Sobic006G197100--Sobic004G042000 Sobic006G197100--Sobic004G349125 Sobic006G197100--Sobic001G416200 Sobic004G202400 Sobic004G202400 Sobic006G197100--Sobic004G202400 Sobic006G197100--Sobic001G264000 Sobic006G197100--Sobic003G311800 Sobic006G197100--Sobic002G042200 Sobic006G197100--Sobic003G368600 Sobic004G239500--Sobic002G418400 Sobic004G239500--Sobic002G090300 Sobic003G215700 Sobic003G215700 Sobic004G239500--Sobic003G215700 Sobic004G239500--Sobic004G042000 Sobic004G239500--Sobic004G055700 Sobic004G239500--Sobic010G028200 Sobic004G239500--Sobic004G024100 Sobic003G436700 Sobic003G436700 Sobic004G239500--Sobic003G436700 Sobic004G239500--Sobic001G147900 Sobic002G003800--Sobic006G197100 Sobic002G003800--Sobic004G042000 Sobic002G003800--Sobic003G311800 Sobic002G003800--Sobic001G302600 Sobic001G049900 Sobic001G049900 Sobic002G003800--Sobic001G049900 Sobic002G003800--Sobic001G416200 Sobic004G310200 Sobic004G310200 Sobic002G003800--Sobic004G310200 Sobic003G079400 Sobic003G079400 Sobic002G003800--Sobic003G079400 Sobic001G304100 Sobic001G304100 Sobic002G003800--Sobic001G304100 Sobic004G139300 Sobic004G139300 Sobic002G001700--Sobic004G139300 Sobic002G001700--Sobic006G197100 Sobic001G430100 Sobic001G430100 Sobic002G001700--Sobic001G430100 Sobic002G001700--Sobic006G256900 Sobic010G110800 Sobic010G110800 Sobic002G001700--Sobic010G110800 Sobic002G001700--Sobic001G264000 Sobic008G102800 Sobic008G102800 Sobic002G001700--Sobic008G102800 Sobic002G001700--Sobic001G049900 Sobic002G001700--Sobic005G065900 Sobic004G024100--Sobic003G404600 Sobic004G024100--Sobic006G256900 Sobic004G024100--Sobic001G147900 Sobic004G024100--Sobic006G197100 Sobic004G024100--Sobic003G152200 Sobic006G059700 Sobic006G059700 Sobic004G024100--Sobic006G059700 Sobic001G161000 Sobic001G161000 Sobic004G024100--Sobic001G161000 Sobic004G024100--Sobic004G042000 Sobic004G024100--Sobic010G110800 Sobic001G264000--Sobic006G197100 Sobic004G348800 Sobic004G348800 Sobic001G264000--Sobic004G348800 Sobic001G264000--Sobic004G042000 Sobic002G185800 Sobic002G185800 Sobic001G264000--Sobic002G185800 Sobic009G035300 Sobic009G035300 Sobic001G264000--Sobic009G035300 Sobic001G264000--Sobic006G256900 Sobic004G249000 Sobic004G249000 Sobic001G264000--Sobic004G249000 Sobic003G269600 Sobic003G269600 Sobic001G264000--Sobic003G269600 Sobic001G264000--Sobic002G003800
Octagon: transcription factors


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